PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

C2H2

Protein Properties

Length: 212aa MW: 23872.5 Da PI: 6.7027

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp1g23140	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.5	0.00021	59	81	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Tp1g23140 59 FSCNYCRRKFYSSQALGGHQNAH 81 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.27E-6	56	87	No hit	No description
PROSITE profile	PS50157	11.385	59	86	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	61	81	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046872	Molecular Function	metal ion binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MTESDDASRE LPAIEGETSL NQDLSKPESN IPVSLDLKLN DSFNDDTKGT KCESNPRVFS 60 CNYCRRKFYS SQALGGHQNA HKRERTMAKR AMHMGRMFGH HHRPYTYTSS SLGMQAHSGL 120 LHHTLSQPQP PPPPLSRFHH HQEYFGNTVP LFFDYDDGSD FFWPGSFRQV VEEAEAPVMV 180 AVTESRLDLN SAAANGHLVD NNSSKPDLTL RL

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269\|PubMed:24808098}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp1g23140

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006415825.1	1e-136	zinc finger protein 7
Refseq	XP_024008975.1	1e-136	zinc finger protein 7
Swissprot	Q39266	1e-127	ZFP7_ARATH; Zinc finger protein 7
TrEMBL	E4MW40	1e-135	E4MW40_EUTHA; mRNA, clone: RTFL01-07-G06
TrEMBL	V4L356	1e-135	V4L356_EUTSA; Uncharacterized protein
STRING	XP_006415825.1	1e-135	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13999	17	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G24625.1	1e-100	zinc finger protein 7

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Joseph MP, et al. The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development. Plant Physiol., 2014. 165(3): p. 1203-1220 [PMID:24808098] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]