PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g22770
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family CO-like
Protein Properties Length: 413aa    MW: 46169.5 Da    PI: 4.859
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g22770genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box26.41.4e-081356340
   zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
               +r C+ + + +++++C  ++ +lC++C +  H+       H++v
  Tp1g22770 13 ARACDSCVKRRARWYCAADDAFLCQSCDTLVHSAnplarrHERV 56
               578*****************************657888888876 PP
2CCT68.41.9e-23360403144
        CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++
  Tp1g22770 360 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRS 403
                9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.2E-101158IPR000315B-box-type zinc finger
PROSITE profilePS5011910.8221158IPR000315B-box-type zinc finger
PfamPF006431.4E-71356IPR000315B-box-type zinc finger
CDDcd000212.83E-101458No hitNo description
PROSITE profilePS5101716.083360402IPR010402CCT domain
PfamPF062035.4E-18360402IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MKTLANAVGA KTARACDSCV KRRARWYCAA DDAFLCQSCD TLVHSANPLA RRHERVRLKS  60
ASPAASKPRN DNNSASSPAH EAATWHHGFT RKARTPRGSG KKNNSSIFHD LVPEIGVEDQ  120
TDSYELEEQL ICQVPVLDPM AADQFLNDVV EPKIEFPMVR SGVMIDDQEE EDNAESCLNG  180
FFPTDMELEE FAADVETLLG RGLDTESFAM QDLGLSNAEM FKIEIDEIEE EVTKSMNMEI  240
CVDDRDEGDG TLPFELSFDY ESHNTYEEEA ITNVERSSGE CIKVKEEEQS NVLMLKLNYD  300
SVISTWGGQG LPWTSGEPPA RDIDIRAWPV VSMGENGGES HQKHYVSGSL PSSGLGDGGR  360
EARVSRYREK RRTRLFSKKI RYEVRKLNAE KRPRMKGRFV KRSSLAVSAS NSP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1370386RRTRLFSKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g22770
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013711556.10.0zinc finger protein CONSTANS-LIKE 16-like
SwissprotQ8RWD00.0COL16_ARATH; Zinc finger protein CONSTANS-LIKE 16
TrEMBLA0A1J3JND80.0A0A1J3JND8_NOCCA; Zinc finger protein CONSTANS-LIKE 16
STRINGBra012475.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24672767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.10.0B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]