PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g22120
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family B3
Protein Properties Length: 531aa    MW: 60437.9 Da    PI: 9.91
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g22120genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.84.7e-1423991295
               HTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
         B3 12 ksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
                ++ l +p +f+++h  g  +   kt +l++  s r+W vk+      ++ +lt+GW++F+ a++L+ gD+ vF+++g++ f  +v+
  Tp1g22120 23 HTH-LNIPVTFFSKHieG-RNDHIKTAKLRTdASDRTWLVKI------NALTLTDGWEDFAIAHDLRIGDITVFRHEGEMVF--HVT 99
               444.99**********63.4444467888775999*******......6788***********************9998888..665 PP
2B375.46.7e-24160254499
                E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                + +++++l+ +rl+lp +fa+++g++k ++k+++l +e+grsW+++liy+k + +++ + GW++F+ +ng+k+g   +Fkl++ +++ +v++++r+
  Tp1g22120 160 AHVSPSNLRFDRLYLPMSFARTNGLDKMSGKEIVLLNEEGRSWNLNLIYNKAGMHTFVRPGWRRFCTENGMKQGHYYTFKLVR-KSGPPVIRLCRA 254
                55678899999**********************************************************************98.9999******97 PP
3B364.22.1e-20275364697
                ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
         B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                ++s++lk +  +lp+kf++ +g++k +s +++l++e+g +W++ l+   + ++++++ GWk+F++ ng+k+gD+++Fkl+g +++++v+ ++
  Tp1g22120 275 LTSYSLKMDKQYLPRKFVTVNGLDKGCS-EIVLKNEWGGRWNLALRRYESFNHTYIGPGWKSFCQVNGIKAGDSFMFKLVG-TGEKPVLCLR 364
                48999*******************9998.****************66666666**************************99.6666777766 PP
4B356.45.3e-18434529198
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                f+  ++++ +lk+++l+lp  f++ +g++k++  ++tl  ++g +  v l  +kk g + ++kGW++F++a+g+k g+++v++l++++e+++v+k++ 
  Tp1g22120 434 FVRLTLTPKALKNCMLILPTGFTRVNGINKTG--KITLLGQDGIKQVVDLLQNKKTGIMRIGKGWRNFCDAHGVKIGESFVLELIWEEEASPVLKFCT 529
                566678999******************99877..7***************88999988************************************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.0E-208106IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.47E-179111IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.46211104IPR003340B3 DNA binding domain
CDDcd100174.69E-131399No hitNo description
SMARTSM010192.8E-2014104IPR003340B3 DNA binding domain
PfamPF023623.0E-82596IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-21150252IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.92E-20153258IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.679157255IPR003340B3 DNA binding domain
SMARTSM010191.2E-28157255IPR003340B3 DNA binding domain
CDDcd100176.10E-18157253No hitNo description
PfamPF023623.8E-23160254IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.2E-18264365IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.65E-18265365IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.734270366IPR003340B3 DNA binding domain
SMARTSM010194.9E-23271367IPR003340B3 DNA binding domain
CDDcd100178.22E-17275365No hitNo description
PfamPF023625.0E-19275365IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.1E-16427529IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-18432527IPR015300DNA-binding pseudobarrel domain
CDDcd100171.57E-14433519No hitNo description
PROSITE profilePS5086311.899434531IPR003340B3 DNA binding domain
SMARTSM010199.6E-23434531IPR003340B3 DNA binding domain
PfamPF023623.3E-17434529IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MADQSLHSPI NSHFFQPLLP GFHTHLNIPV TFFSKHIEGR NDHIKTAKLR TDASDRTWLV  60
KINALTLTDG WEDFAIAHDL RIGDITVFRH EGEMVFHVTA LGPSCCEIQY TSFHNTNEDS  120
HDQTNNSVIG SRSRKNRKRM KKNTRKKVES SSSDHSLFVA HVSPSNLRFD RLYLPMSFAR  180
TNGLDKMSGK EIVLLNEEGR SWNLNLIYNK AGMHTFVRPG WRRFCTENGM KQGHYYTFKL  240
VRKSGPPVIR LCRAEHEPKT DPKSSRHHSC YMGSLTSYSL KMDKQYLPRK FVTVNGLDKG  300
CSEIVLKNEW GGRWNLALRR YESFNHTYIG PGWKSFCQVN GIKAGDSFMF KLVGTGEKPV  360
LCLRPAESLD CPRDSDDEKS LSSNTSSGDD SSKSHEGKKE SLGDKNILQE RFEMEKNKNF  420
SRCRASSSYS QDRFVRLTLT PKALKNCMLI LPTGFTRVNG INKTGKITLL GQDGIKQVVD  480
LLQNKKTGIM RIGKGWRNFC DAHGVKIGES FVLELIWEEE ASPVLKFCTK L
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133141RKNRKRMKK
2134146KNRKRMKKNTRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g22120
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013639399.10.0PREDICTED: B3 domain-containing protein REM17-like
SwissprotQ84WP31e-169REM17_ARATH; B3 domain-containing protein REM17
TrEMBLA0A0D3CDE60.0A0A0D3CDE6_BRAOL; Uncharacterized protein
STRINGBo5g044960.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57811648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.11e-160B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]