PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g22010
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family Dof
Protein Properties Length: 370aa    MW: 41806.9 Da    PI: 7.7414
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g22010genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof118.72.1e-3799158261
     zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                ++k+l+cprC+s++tkfCyynny+++qPr+fC++C+ryWt GG++r vPvG+grrknk +
  Tp1g22010  99 PDKILPCPRCNSADTKFCYYNNYNVNQPRHFCRNCQRYWTSGGSMRTVPVGSGRRKNKGW 158
                7899*****************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-3096156IPR003851Zinc finger, Dof-type
PfamPF027019.1E-31101156IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.323103157IPR003851Zinc finger, Dof-type
PROSITE patternPS013610105141IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MSELRDTPIK LFGWTITSSL SPVLPDSSSS SSSSSTSLGL HMMNNQSATD NREQDKTCIQ  60
ISSDFNKESK ETSENSDDQH SEITTTTMSE EKTTELKKPD KILPCPRCNS ADTKFCYYNN  120
YNVNQPRHFC RNCQRYWTSG GSMRTVPVGS GRRKNKGWVS TDHYMHINSE NTSSDYTNNY  180
NSSSTKILSF ESSDSFVTEN GKHQPNDKKI DSDSVSQDFN NFKGFLPPQV TSPISPPWPY  240
QYPPNPSFYH IPVFWGCTVP VWSTLETSTC LGKRTRDEAS NESVRESKDT FARARSDSQS  300
QSNNNEASVA TKNYVLYPMP TKRKKTEQFS LFANGSETKS SDKRFVPETY LNLQANPAAM  360
ARSMNFRESI
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g22010
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006415958.10.0dof zinc finger protein DOF1.3 isoform X2
SwissprotQ9LQX40.0DOF13_ARATH; Dof zinc finger protein DOF1.3
TrEMBLV4MRD70.0V4MRD7_EUTSA; Uncharacterized protein
STRINGXP_006415958.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM140821624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26790.11e-157Dof family protein