PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g22000
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family G2-like
Protein Properties Length: 275aa    MW: 31669.4 Da    PI: 6.0218
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g22000genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like26.91.1e-081203655
    G2-like 36 mkvkgLtlehvkSHLQkYRl 55
               m+++ Ltl+h+kSHLQkYRl
  Tp1g22000  1 MEIPELTLHHLKSHLQKYRL 20
               999****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.0E-7122IPR009057Homeodomain-like
PfamPF143796.5E-2169115IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MEIPELTLHH LKSHLQKYRL GISERFVGNK QDVSSAAKFQ ECQSQKNFRD QLDIIVTEEK  60
DDQPNKNLRI KEATKIQLEV QKKLHEQIEV QRKLQVRIEA QGKYLQSVLM KAQETLSGYT  120
SSHLGIDFPR SDLYGVGSIA NRSCLSSSFS ELTQADEEDE VEEEYDFLGT KKPENRGIET  180
ARSSVDSSLA SSERSEAKPD YNSENLMRRS NELQLIEIKP EEVMEQKKRR WDDVVCEEQS  240
IRKRAFRGHK GEDFGLSLNS FKDMETCSKS KSSNK
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g22000
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009110746.11e-127PREDICTED: myb family transcription factor PHL8-like isoform X2
RefseqXP_018509350.11e-126PREDICTED: myb family transcription factor PHL8-like isoform X1
SwissprotF4I2745e-83PHL8_ARATH; Myb family transcription factor PHL8
TrEMBLA0A3N6Q2G91e-124A0A3N6Q2G9_BRACR; Uncharacterized protein
STRINGBo8g076470.11e-124(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38782759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69580.11e-81G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]