PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g21820
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family HD-ZIP
Protein Properties Length: 264aa    MW: 30397.7 Da    PI: 5.6383
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g21820genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.12.6e-1777130356
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                k+++++ eql++Le+ Fe  +++  +++ eLA+ lgL+ rq+ +WFqNrRa+ k
  Tp1g21820  77 KKRRLNMEQLKTLEKNFELGNKLESDRKLELARALGLQPRQIAIWFQNRRARSK 130
                456899**********************************************99 PP
2HD-ZIP_I/II122.12.8e-3976168193
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  ekkrrl+ eq+k+LE++Fe  +kLe++rK elar+Lglqprq+a+WFqnrRAR ktkqlE+dy++Lkr++++lk+ene+L++++++L++++++
    Tp1g21820  76 EKKRRLNMEQLKTLEKNFELGNKLESDRKLELARALGLQPRQIAIWFQNRRARSKTKQLERDYDTLKRQFESLKDENETLQTQNQKLQAQVMA 168
                  69**************************************************************************************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.55E-1958134IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-1766129IPR009057Homeodomain-like
PROSITE profilePS5007116.92572132IPR001356Homeobox domain
SMARTSM003896.6E-1775136IPR001356Homeobox domain
CDDcd000861.08E-1477133No hitNo description
PfamPF000461.0E-1477130IPR001356Homeobox domain
PRINTSPR000314.8E-6103112IPR000047Helix-turn-helix motif
PROSITE patternPS000270107130IPR017970Homeobox, conserved site
PRINTSPR000314.8E-6112128IPR000047Helix-turn-helix motif
Gene3DG3DSA:1.20.5.1708.5E-4130170No hitNo description
PfamPF021836.9E-16132172IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MSCNNGLAFF PANFSLQNHH HEEEDHPQSL LPSSTLPQDF HGFLGKRSPM PNVEGFCNLE  60
MNGEDEYSDD GSKIGEKKRR LNMEQLKTLE KNFELGNKLE SDRKLELARA LGLQPRQIAI  120
WFQNRRARSK TKQLERDYDT LKRQFESLKD ENETLQTQNQ KLQAQVMALK SREPIESINL  180
NKETEGSCSN RSENISGDIR PLEINSQFAG GHPPSSPTTT TMQFFHNSSS EQRMVKEENS  240
ISNMFCGIDD QSGFWPWLDQ QHYN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124132RRARSKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g21820
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellic acid (GA3). {ECO:0000269|PubMed:17387478}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006415983.10.0homeobox-leucine zipper protein ATHB-23
SwissprotQ8LFD31e-168ATB23_ARATH; Homeobox-leucine zipper protein ATHB-23
TrEMBLV4MRF60.0V4MRF6_EUTSA; Uncharacterized protein
STRINGXP_006415983.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26332770
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26960.11e-164homeobox protein 23
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kazama D,Kurusu T,Mitsuda N,Ohme-Takagi M,Tada Y
    Involvement of elevated proline accumulation in enhanced osmotic stress tolerance in Arabidopsis conferred by chimeric repressor gene silencing technology.
    Plant Signal Behav, 2014. 9(3): p. e28211
    [PMID:24614501]
  3. Ribone PA,Capella M,Chan RL
    Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
    J. Exp. Bot., 2015. 66(19): p. 5929-43
    [PMID:26136262]
  4. Kazama D, et al.
    Identification of Chimeric Repressors that Confer Salt and Osmotic Stress Tolerance in Arabidopsis.
    Plants (Basel), 2013. 2(4): p. 769-85
    [PMID:27137403]