PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g20080
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family M-type_MADS
Protein Properties Length: 162aa    MW: 18818 Da    PI: 10.1745
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g20080genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.31.3e-151150342
               --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
     SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
               i+++s r vtf kR+ g+lKK +EL +LC+ +++ ii+s 
  Tp1g20080 11 ISDNSTRRVTFRKRKDGLLKKLNELTILCGLRACAIIYSD 50
               8999**********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.8E-18160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.927150IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.54E-21185IPR002100Transcription factor, MADS-box
CDDcd002668.17E-20285No hitNo description
PRINTSPR004046.0E-8323IPR002100Transcription factor, MADS-box
PfamPF003193.1E-151151IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-82338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MGRRKVTHQL ISDNSTRRVT FRKRKDGLLK KLNELTILCG LRACAIIYSD YKEGPELWPN  60
RKEVRVLLNR LNALPLEKQT KYMMDQKDLM NRMIQDTKKK LEKEQMHSRA MDLGLIASSN  120
DLKDADYSED LIKAADVVEK KMKIIRERIE AVQSGAALVE KE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RRKVTHQLISDNSTRRVTFRKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g20080
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009115622.11e-102PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLA0A087HQF01e-101A0A087HQF0_ARAAL; Uncharacterized protein
STRINGA0A087HQF01e-102(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22590.21e-89AGAMOUS-like 87