PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g17530
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family TALE
Protein Properties Length: 548aa    MW: 61783.3 Da    PI: 6.4173
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g17530genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.94.7e-103804171954
                HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
   Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                Fe   ++yp+++e+  LAk++gL+++qV +WF N R +
  Tp1g17530 380 FEHflHPYPKESEKMMLAKQTGLSKNQVANWFINARVR 417
                554459******************************88 PP
2BELL116.51.3e-37241312172
       BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                erqelq+kk+kLl++++eVdkrY+qy++q+++++ssF++vaglgsakpYts+Al++iS hFr+L+d i+eqi
  Tp1g17530 241 ERQELQNKKNKLLTMVDEVDKRYNQYYHQMEALASSFDVVAGLGSAKPYTSVALNRISCHFRSLRDTIKEQI 312
                79*********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005747.4E-50169310IPR006563POX domain
PfamPF075267.0E-47175308IPR006563POX domain
PROSITE profilePS5007112.552358421IPR001356Homeobox domain
SMARTSM003891.6E-9361425IPR001356Homeobox domain
CDDcd000861.36E-11361422No hitNo description
SuperFamilySSF466892.74E-17362428IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-27364427IPR009057Homeodomain-like
PfamPF059209.5E-18378417IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MAVYYPSNVN CYQQEPIYLN HQQQQQQQAS SSSAAASFVG ASGENVRNEM VFIPPTTGDV  60
VTGLRNLNGD VTGNGPVSSS DLSFHDGQGL SLSLGTQISV PSFHYHQYQL GFTPHPPMPV  120
KETPPFNVDE ISVKSKEMVL LGQSDPSSGY TGNGGIGFYS NYRHNETSGA FMSSVLRSRY  180
LKPVQNLLDE VVSVKKELNQ MRKKKKGEDF NNGSKETEGG GGGGEISSDS NGKSIELSTT  240
ERQELQNKKN KLLTMVDEVD KRYNQYYHQM EALASSFDVV AGLGSAKPYT SVALNRISCH  300
FRSLRDTIKE QIQIIREKLG EKGESSDEQQ GERIPRLRYL DQRLRQQRAL HQQLGMVRPA  360
WRPQRGLPEN SVSALRAWLF EHFLHPYPKE SEKMMLAKQT GLSKNQVANW FINARVRLWK  420
PMIEEMYKEE FGDESELLIS KSSQEPNSTN QEDSSSQQQQ ENNKNNNNLT YSSADTSNIA  480
FSSEPKPDRI SGNDDESQQQ QQHMNRTADY DTLMNYHGYG LDDYRYIGGT NQQDSRFSNG  540
HHLHDFVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-15367425563Homeobox protein Meis2
3k2a_B2e-15367425563Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g17530
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3526000.0AK352600.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-03-C02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006416473.10.0BEL1-like homeodomain protein 10
RefseqXP_024008357.10.0BEL1-like homeodomain protein 10
SwissprotQ9FXG80.0BLH10_ARATH; BEL1-like homeodomain protein 10
TrEMBLA0A1J3FV780.0A0A1J3FV78_NOCCA; BEL1-like homeodomain protein 10
STRINGXP_006416473.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38201959
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19700.30.0BEL1-like homeodomain 10
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]