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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp1g17380 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | MYB_related | ||||||||
Protein Properties | Length: 90aa MW: 10030.3 Da PI: 9.5555 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.5 | 2.6e-07 | 11 | 54 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +WT + + +a + + ++ +W +a+ +g ++++++k+++ Tp1g17380 11 SWTSKQNKMFERALAVYDKDtpdRWQNVAKAVG-SKSAEEVKLHY 54 7********************************.**********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.214 | 4 | 58 | IPR017877 | Myb-like domain |
SMART | SM00717 | 6.4E-6 | 8 | 60 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.2E-12 | 10 | 65 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.8E-5 | 11 | 54 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.32E-5 | 18 | 54 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 90 aa Download sequence Send to blast |
MASSSMNSSS SWTSKQNKMF ERALAVYDKD TPDRWQNVAK AVGSKSAEEV KLHYDILVQD 60 LINIQQNLVP LPNYKTVDVG SKSRGINVSI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-29 | 3 | 77 | 2 | 76 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp1g17380 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC025808 | 5e-82 | AC025808.8 Genomic sequence for Arabidopsis thaliana BAC F18O14 from chromosome I, complete sequence. | |||
GenBank | AK119034 | 5e-82 | AK119034.1 Arabidopsis thaliana At1g19510 mRNA for putative myb-related protein, complete cds, clone: RAFL21-36-F10. | |||
GenBank | AY519524 | 5e-82 | AY519524.1 Arabidopsis thaliana MYB transcription factor (At1g19510) mRNA, complete cds. | |||
GenBank | BT005657 | 5e-82 | BT005657.1 Arabidopsis thaliana clone U51233 putative myb family transcription factor (At1g19510) mRNA, complete cds. | |||
GenBank | CP002684 | 5e-82 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010459622.1 | 1e-44 | PREDICTED: protein RADIALIS-like 5 | ||||
Refseq | XP_010498374.1 | 1e-44 | PREDICTED: protein RADIALIS-like 5 | ||||
Refseq | XP_020870089.1 | 1e-44 | protein RADIALIS-like 5 | ||||
Swissprot | Q8GW75 | 4e-45 | RADL5_ARATH; Protein RADIALIS-like 5 | ||||
TrEMBL | A0A087HPN2 | 7e-47 | A0A087HPN2_ARAAL; Uncharacterized protein | ||||
STRING | A0A087HPN2 | 1e-47 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM221 | 28 | 198 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19510.1 | 2e-46 | RAD-like 5 |