PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp1g17120 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | ARF | ||||||||
Protein Properties | Length: 1077aa MW: 119341 Da PI: 6.7945 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.2 | 3.3e-23 | 126 | 227 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k+lt sd++++g +++p++ ae++ + +++ ++++ +d++ +W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F ++++ +l+ Tp1g17120 126 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QEIVAKDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFV--RDEKSQLM 221 99*****************************954.4444.48************************************************..4567778* PP EEEE-S CS B3 94 vkvfrk 99 ++++r+ Tp1g17120 222 LGIRRA 227 ***997 PP | |||||||
2 | Auxin_resp | 118.5 | 5.3e-39 | 252 | 334 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aaha +++s+F++++nPras+seFvv+++k++kal+ +vs+GmRf+m+feted+ rr++Gtv+g+sdldp+rW++S+Wr+L+ Tp1g17120 252 AAHANANSSPFTIFFNPRASPSEFVVPLAKYNKALYAQVSLGMRFRMMFETEDCGVRRYMGTVTGISDLDPIRWKGSQWRNLQ 334 799******************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.4E-44 | 116 | 255 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 8.0E-42 | 120 | 241 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.70E-21 | 125 | 226 | No hit | No description |
SMART | SM01019 | 1.0E-24 | 126 | 228 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.534 | 126 | 228 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.6E-21 | 126 | 227 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 8.1E-34 | 252 | 334 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 7.6E-10 | 947 | 1035 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 25.583 | 949 | 1042 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 1.63E-8 | 963 | 1027 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0010311 | Biological Process | lateral root formation | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 1077 aa Download sequence Send to blast |
MKAPSNGFHP NSTEGEKKAI NSQLWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKQ 60 TDFIPNYPNL PSKLICLLHS VTLHADTETD EVYAQMTLQP VNKYDREALL ASDMGLKLNR 120 QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVAKD LHDTTWTFRH 180 IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFVRDEKSQL MLGIRRANRQ TPTLSSSVIS 240 SDSMHIGILA AAAHANANSS PFTIFFNPRA SPSEFVVPLA KYNKALYAQV SLGMRFRMMF 300 ETEDCGVRRY MGTVTGISDL DPIRWKGSQW RNLQVGWDES TAGDRPSRVS IWEIEPVITP 360 FYICPPPFFR PKYPRQPGMP DDELDIENAF KRAMPWMGEE FGMKDAQSSM FPGLSLVQWM 420 SMQQNNPLTA GAATTQLPSA LSSYNLPNNF ASNDPSKLLN FQSPNLSPTN SQFNKPNMVN 480 HISQQMQAQP AMVKSQQHQQ QLQQQVQMSH QQMQQHHHQQ QGVYNTGSVN NGMSVVSNQV 540 SCQNQSAGFS QSQLQQQSML SNGPKMTHQN IVSTGNKGSS QMTSFAQELQ FQQQLELHNS 600 SQLLRNQQEQ SSMHSLQQTL SQNPQQLQMQ QQSSKPSPPQ QLQLQLLQKL QQQQQQSIPP 660 VSSSLQPQLS ALQQTQSHQL QQLLSSQNQQ PLAHGNNSFS ASTFMQPPQI QVSHQQQGQM 720 NNKPLAAAGR SHSGHADGEA PSCSTSPSAN NTGHDNVSPT NFLNRNQQQG QAVSASDSIF 780 ERPSNPLQEL YTKTESRNNQ GMVNLKSAAE QFKFKGAVTD QVDVSTAGTT YCPDVGPAQQ 840 QQTFPLPSFG FDGDCRSHQP RNNLAFAGNL EAVTSDALYS QKDFQNLVPN YGNAPRDIET 900 ELSSAAISSQ SFGIPSIPFK SGGSNEIGGI NDSGIMNGGL WPNQTQRMRT YTKVQKRGSV 960 GRSIDVTRYS GYDELRHDLA RMFGIEGQLE DPQTSDWKLV YTDHENDILL VGDDPWEEFV 1020 NCVQNIKILS SAEVQQMSLD GDLAAIATTN QACSETDSGN AWKVHYEDTS AAASFNR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-172 | 16 | 355 | 47 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Involved in ethylene responses. Regulates lateral root formation through direct regulation of LBD16 and/or LBD29. Functionally redundant with ARF7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16461383, ECO:0000269|PubMed:17259263}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp1g17120 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin and ethylene. {ECO:0000269|PubMed:16461383}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN979484 | 0.0 | JN979484.1 Brassica rapa subsp. pekinensis auxin response factor 19-2 (ARF19-2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006416527.1 | 0.0 | auxin response factor 19 | ||||
Swissprot | Q8RYC8 | 0.0 | ARFS_ARATH; Auxin response factor 19 | ||||
TrEMBL | A0A087HPL0 | 0.0 | A0A087HPL0_ARAAL; Auxin response factor | ||||
STRING | A0A087HPL0 | 0.0 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2629 | 26 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19220.1 | 0.0 | auxin response factor 19 |