PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

ERF

Protein Properties

Length: 200aa MW: 22379.5 Da PI: 4.4761

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp1g17110	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	60.1	5e-19	9	59	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGVr +k +g+Wv+eIr p++ r r++lg+++++e+Aa+a +aa +l+g Tp1g17110 9 SKYKGVRKRK-WGKWVSEIRLPNS---RERIWLGSYDSPEKAARAFDAALFCLRG 59 89***999.******933...5***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	1.57E-20	9	68	IPR016177	DNA-binding domain
Pfam	PF00847	9.7E-12	9	59	IPR001471	AP2/ERF domain
CDD	cd00018	8.05E-28	9	69	No hit	No description
Gene3D	G3DSA:3.30.730.10	1.7E-28	10	68	IPR001471	AP2/ERF domain
SMART	SM00380	1.4E-30	10	73	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	21.746	10	67	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.6E-9	11	22	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.6E-9	33	49	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MEGSSSMQSK YKGVRKRKWG KWVSEIRLPN SRERIWLGSY DSPEKAARAF DAALFCLRGG 60 GAKFNFPDNP PTINGGRNLS RSEIREAAAR FANSEENVAR EKNSTSDGRA GYEMTTQQES 120 SPSTSVASSS MMTMDIDSEF LSMLPTVGSG NFASDFGLFP GFDDFSDEYS GDRFREEISP 180 TDDYYQGDEI YDGSLYLWNF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	5e-15	3	67	7	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	11	17	KGVRKRK

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00151	DAP	Transfer from AT1G19210	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp1g17110

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY008390	4e-69	AY008390.1 Arabidopsis thaliana ARF11/IAA22 gene, complete cds.
GenBank	BT006191	4e-69	BT006191.1 Arabidopsis thaliana clone C00087 (K) putative AP2 domain transcription factor (At1g19210) mRNA, complete cds.
GenBank	CP002684	4e-69	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBank	T29M8	4e-69	AC069143.3 Sequence of BAC T29M8 from Arabidopsis thaliana chromosome 1, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006306071.1	1e-102	ethylene-responsive transcription factor ERF017
Swissprot	Q84QC2	1e-103	ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBL	A0A1J3H9Y4	1e-105	A0A1J3H9Y4_NOCCA; Uncharacterized protein
STRING	Bostr.7128s0526.1.p	1e-104	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1614	28	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19210.1	1e-104	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Li SJ, et al. The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4. Sci Rep, 2016. 6: p. 20151 [PMID:26837571] Yin XR, et al. Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening. Plant J., 2016. 86(5): p. 403-12 [PMID:27037684]