PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp1g16760

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

M-type_MADS

Protein Properties

Length: 387aa MW: 44760.7 Da PI: 6.9782

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp1g16760	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	70.8	1.2e-22	19	63	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr e++ nrqvt+skR+ gilKKA+ELS+LCd+++ +++fs+tg+ Tp1g16760 19 KRLESTGNRQVTYSKRKSGILKKAKELSILCDIDIVLLMFSPTGR 63 6889***************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.6E-30	11	70	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	24.726	11	71	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.35E-26	12	105	IPR002100	Transcription factor, MADS-box
CDD	cd00266	5.47E-27	12	92	No hit	No description
PRINTS	PR00404	2.0E-18	13	33	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.9E-19	22	65	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.0E-18	33	48	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.0E-18	48	69	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010152	Biological Process	pollen maturation
GO:0080092	Biological Process	regulation of pollen tube growth
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence Send to blast
MLIRSEISQR MGRVKLKIKR LESTGNRQVT YSKRKSGILK KAKELSILCD IDIVLLMFSP 60 TGRPTIFHGE HSCIEEVISK FAQLTPQERT KRKLESLEAL KKTFKKLDHD VNIHEFLGAR 120 WLKPLLTLTT RQGLSNQVAI FQAQVMECHR RLSCWTNIDR IENTEHLNLL EESLRKSIER 180 IQIHKEHYRK NQLLPIECTT TQFHSGIQLP LAIGGNNSMQ EAHTMSWLPD NDNQQTILHG 240 DSSFLPHREM DVLIPVYSNC FFESTKQEDQ MCRNPGKTFE QLEQQGNGCL GLQQIGEEYS 300 YPTPFGTTLG MEEDQEKKIK SEMDMNNMQQ QQQQQQDPSS MYDSTVNNGG CYQIPHDQSI 360 FATDHHHHQN WVSDSVFGQT SYNQQLN

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence Send to blast

MLIRSEISQR MGRVKLKIKR LESTGNRQVT YSKRKSGILK KAKELSILCD IDIVLLMFSP  60
TGRPTIFHGE HSCIEEVISK FAQLTPQERT KRKLESLEAL KKTFKKLDHD VNIHEFLGAR  120
WLKPLLTLTT RQGLSNQVAI FQAQVMECHR RLSCWTNIDR IENTEHLNLL EESLRKSIER  180
IQIHKEHYRK NQLLPIECTT TQFHSGIQLP LAIGGNNSMQ EAHTMSWLPD NDNQQTILHG  240
DSSFLPHREM DVLIPVYSNC FFESTKQEDQ MCRNPGKTFE QLEQQGNGCL GLQQIGEEYS  300
YPTPFGTTLG MEEDQEKKIK SEMDMNNMQQ QQQQQQDPSS MYDSTVNNGG CYQIPHDQSI  360
FATDHHHHQN WVSDSVFGQT SYNQQLN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	1e-13	11	102	1	90	Myocyte-specific enhancer factor 2B
1tqe_Q	1e-13	11	102	1	90	Myocyte-specific enhancer factor 2B
1tqe_R	1e-13	11	102	1	90	Myocyte-specific enhancer factor 2B
1tqe_S	1e-13	11	102	1	90	Myocyte-specific enhancer factor 2B
5f28_A	1e-13	11	102	1	90	MEF2C
5f28_B	1e-13	11	102	1	90	MEF2C
5f28_C	1e-13	11	102	1	90	MEF2C
5f28_D	1e-13	11	102	1	90	MEF2C
6c9l_A	1e-13	11	102	1	90	Myocyte-specific enhancer factor 2B
6c9l_B	1e-13	11	102	1	90	Myocyte-specific enhancer factor 2B
6c9l_C	1e-13	11	102	1	90	Myocyte-specific enhancer factor 2B
6c9l_D	1e-13	11	102	1	90	Myocyte-specific enhancer factor 2B
6c9l_E	1e-13	11	102	1	90	Myocyte-specific enhancer factor 2B
6c9l_F	1e-13	11	102	1	90	Myocyte-specific enhancer factor 2B
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp1g16760

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB094116	0.0	AB094116.1 Arabidopsis thaliana At1g18750 mRNA for MADS-box protein, partial cds.
GenBank	AY143172	0.0	AY143172.1 Arabidopsis thaliana MADS-box protein AGL65 (AGL65) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013660239.1	0.0	agamous-like MADS-box protein AGL65
Swissprot	Q7X9I0	0.0	AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBL	M4EQH8	0.0	M4EQH8_BRARP; Uncharacterized protein
STRING	Bra031049.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5933	25	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18750.1	0.0	AGAMOUS-like 65

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]