PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g16710
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family MYB
Protein Properties Length: 249aa    MW: 28340.9 Da    PI: 6.6795
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g16710genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.96.4e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg WT+eEd++lv ++ ++G g+W+  +++ g+ R++k c++rw++yl
        Tp1g16710 14 RGEWTEEEDQKLVAYIDEFGIGDWRFLPHRAGLQRCGKGCRLRWLNYL 61
                     89********************************************97 PP
2Myb_DNA-binding44.53.5e-1467110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++T+ E+e +++ +  +G++ W++Ia+ m+ gR+++++k+ w++
        Tp1g16710  67 KGKFTPKEEEDIINFHSVFGNR-WAAIAQLMP-GRSDNDIKNLWNS 110
                      79********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.087961IPR017930Myb domain
SuperFamilySSF466895.03E-2812108IPR009057Homeodomain-like
SMARTSM007171.2E-101363IPR001005SANT/Myb domain
PfamPF002498.5E-131461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.4E-221568IPR009057Homeodomain-like
CDDcd001671.33E-81661No hitNo description
PROSITE profilePS5129421.47262116IPR017930Myb domain
SMARTSM007172.3E-1166114IPR001005SANT/Myb domain
PfamPF002493.9E-1367111IPR001005SANT/Myb domain
CDDcd001671.52E-769109No hitNo description
Gene3DG3DSA:1.10.10.606.0E-2469116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MGRATWFEAD GTKRGEWTEE EDQKLVAYID EFGIGDWRFL PHRAGLQRCG KGCRLRWLNY  60
LRPGVKKGKF TPKEEEDIIN FHSVFGNRWA AIAQLMPGRS DNDIKNLWNS CLKKRLERNG  120
IDPMTHQPII NLAVKTPSFT VDCGSSSSST VSPSSSSSSR SARLLNKIAA GVSSRQHGVD  180
RIKNILSDDP RITNIGVQQE EFEELKKTHG KIIASDDQED DFLMWDEEKM RRFMEEVGVM  240
DIETNGVYN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-28141177109B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g16710
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013603474.11e-139PREDICTED: transcription factor MYB34-like
SwissprotQ9LDR82e-55MY102_ARATH; Transcription factor MYB102
TrEMBLA0A3N6S5D11e-141A0A3N6S5D1_BRACR; Uncharacterized protein
STRINGBo8g068030.11e-138(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18710.13e-87myb domain protein 47
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  4. Zhu L,Guo J,Ma Z,Wang J,Zhou C
    Arabidopsis Transcription Factor MYB102 Increases Plant Susceptibility to Aphids by Substantial Activation of Ethylene Biosynthesis.
    Biomolecules, 2019.
    [PMID:29880735]