PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp1g15990 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 693aa MW: 77592.1 Da PI: 6.8975 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.2 | 1.6e-19 | 25 | 76 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++t++q+++Le+ F+++++p++++r +L+k+lgL rq+k+WFqNrR+++k Tp1g15990 25 HRHTPHQIQRLESTFNECQHPDEKQRMQLSKELGLAPRQIKFWFQNRRTQKK 76 689**********************************************988 PP | |||||||
2 | START | 152.9 | 2.8e-48 | 215 | 436 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECT CS START 2 laeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.......dsgealrasgvvdmvlallveellddkeqWdetla....kaetleviss 87 +a +a++el+++ + +ep+W+k + +n + + +f++s + +++ea r sg+v+ ++++lv l+d+ ++ e ++ + +tl+viss Tp1g15990 215 IAVTAMEELLRLTQTNEPLWMKTNgcrDVLNLESYENIFPRSSSrggknhnYRVEATRSSGIVFTNAMTLVDMLMDSV-KFAELFPsivaASKTLAVISS 313 6889**********************999**********9998899********************************.66666666666********** PP T......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX.HH CS START 88 g......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlp.hw 179 g al+l elq+lsplvp R+f ++Ry++q + g+w+iv vS + +q+ + + R+ ++pSg+li+++sng+skvtwvehv+ +++ p h+ Tp1g15990 314 GlrrnhgDALHLVLEELQVLSPLVPtREFSVLRYCQQIEHGTWAIVNVSYEFPQFIS-H---SRSYRFPSGCLIQDMSNGYSKVTWVEHVEIEEQEPiHE 409 ******99***********************************************98.4...56666********************************* PP HHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 180 llrslvksglaegaktwvatlqrqcek 206 +++ v+ gla+ga +w atlqr ce+ Tp1g15990 410 IFKDNVREGLAFGAERWIATLQRMCER 436 *************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-21 | 7 | 72 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.67E-19 | 8 | 78 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.734 | 18 | 78 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.7E-18 | 19 | 82 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 4.0E-17 | 25 | 76 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.69E-18 | 25 | 79 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 53 | 76 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 49.352 | 205 | 439 | IPR002913 | START domain |
SuperFamily | SSF55961 | 2.75E-29 | 206 | 437 | No hit | No description |
CDD | cd08875 | 1.50E-104 | 209 | 435 | No hit | No description |
SMART | SM00234 | 2.6E-33 | 214 | 436 | IPR002913 | START domain |
Pfam | PF01852 | 1.6E-40 | 215 | 436 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 3.7E-6 | 262 | 402 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 4.94E-16 | 491 | 684 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010091 | Biological Process | trichome branching | ||||
GO:0048497 | Biological Process | maintenance of floral organ identity | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 693 aa Download sequence Send to blast |
MEFLGDSQNH DSSETDKKKK KKRFHRHTPH QIQRLESTFN ECQHPDEKQR MQLSKELGLA 60 PRQIKFWFQN RRTQKKAQHE RADNCALKEE NDKIRCENIA IREAIKHAIC PNCGDAPVHE 120 DSYFDEQKLR IENAQLREEL ERVSGIAAKF MGRPFSHLQP LLNPMHISSL ELFHSGPSLD 180 FDLLPGSCSS LAVPTLPSQP NLVLSDMDKS LMTSIAVTAM EELLRLTQTN EPLWMKTNGC 240 RDVLNLESYE NIFPRSSSRG GKNHNYRVEA TRSSGIVFTN AMTLVDMLMD SVKFAELFPS 300 IVAASKTLAV ISSGLRRNHG DALHLVLEEL QVLSPLVPTR EFSVLRYCQQ IEHGTWAIVN 360 VSYEFPQFIS HSRSYRFPSG CLIQDMSNGY SKVTWVEHVE IEEQEPIHEI FKDNVREGLA 420 FGAERWIATL QRMCERFTAL LEPTTSSRDL KGGKRSIMRL AHRMVSNFCL SVGTSNNTRS 480 MVISGLNEFG IRVTSYKSQY EPNGMILCAA TSFWLSVSPQ NVFNFLKDER TRPQWDVLLN 540 GNSVQEVAHI ANGSHPGNCI SVLRGFNASS SQNNMLILQE SCVDSSASLV VYTPVDLPAL 600 NMAMSGQDTS YIPILSSGFA VLPDGTRNNQ TAELKVEGGG EGGGGSLITV GFQIMVNSLQ 660 SAKLNMESME TVNNLISTTV HQIKTTLNCP STA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 16 | 22 | KKKKKKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that acts as negative regulator of trichome branching in association with HDG11 (PubMed:16778018). May regulate cell differentiation and proliferation during root and shoot meristem development (PubMed:25564655). Acts as positive regulator of SCL18/LAS expression (PubMed:25358340). {ECO:0000269|PubMed:16778018, ECO:0000269|PubMed:25358340, ECO:0000269|PubMed:25564655}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp1g15990 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493465 | 0.0 | AB493465.1 Arabidopsis thaliana At1g17920 mRNA for hypothetical protein, partial cds, clone: RAAt1g17920. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006416656.2 | 0.0 | homeobox-leucine zipper protein HDG12 | ||||
Swissprot | Q9LMT8 | 0.0 | HDG12_ARATH; Homeobox-leucine zipper protein HDG12 | ||||
TrEMBL | V4KUN5 | 0.0 | V4KUN5_EUTSA; Uncharacterized protein | ||||
STRING | XP_006416656.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3004 | 26 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17920.1 | 0.0 | homeodomain GLABROUS 12 |
Publications ? help Back to Top | |||
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