PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g15600
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family MYB_related
Protein Properties Length: 566aa    MW: 63400.2 Da    PI: 6.446
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g15600genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.32e-09460508348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +W+  E ++lv++v ++G g W+ I r       +Rt+ ++k++w+++l
        Tp1g15600 460 AWSLTEVKKLVEGVSKYGVGKWSEIKRLSFssyAHRTPVDLKDKWRNLL 508
                      7***************************999****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.667453512IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-13455514IPR009057Homeodomain-like
SMARTSM007176.3E-10457510IPR001005SANT/Myb domain
CDDcd116605.8E-21459509No hitNo description
SuperFamilySSF466891.35E-16459518IPR009057Homeodomain-like
PfamPF139211.4E-7461518No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 566 aa     Download sequence    Send to blast
MLEVKELLEN NEEDMPIIPD PGQTEEYIPD EGSPSQFLQL DSFEGLFQSE TAEAYMEKLN  60
SRLESKENFM YGSQMLLTLP DTKYQSSNEL PGNEELVQSE ILVQEPIRFS SNGCSMDQSM  120
DVSPYSISTD SPKAPALATA ASKPGFFRDT SEICLDNLSI KGLQETFKAA FGRETTCKDK  180
HWLKRRIKME LVNPCVIPTT SLTINDNKLI GGGQINYNDR IDAFVKDTVD GRADNCKDTP  240
YSPDCMKGYP NGDSPVEALM DHYSGNEDFE GDYRSAKRVR KPTKRYIEEI SEINENQQSN  300
ESVIPSKDER CISAVSSGGR VVVTRIVSLA GSKIHVPYVS HVRRSRPREN IMALGEFRSS  360
LREVKATPEE SNLNPSQSQL NNDLNRVSGV KSVSRPVQKE LATNLQSDKD HSKPNLCEVD  420
QDIMEPEHTD SSGDSSDDSN NNRVGLPIMQ NVIRRKHHRA WSLTEVKKLV EGVSKYGVGK  480
WSEIKRLSFS SYAHRTPVDL KDKWRNLLKA SFARTPSNRM GSLKKNGSMA IPSQVLLQVR  540
ELAQKQSLVS PASKARMVKA SRNGFL
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g15600
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024008695.10.0uncharacterized protein LOC18993148
TrEMBLV4L5N60.0V4L5N6_EUTSA; Uncharacterized protein
STRINGXP_006416700.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43642649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17460.10.0TRF-like 3