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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Tp1g14640 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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| Family |
MYB |
| Protein Properties |
Length: 270aa MW: 30965.2 Da PI: 4.9287 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Tp1g14640 | genome | thellungiella | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 49.7 | 8.5e-16 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg+W+++Ed++l+ +++ G ++W++ ++ g+ R++k+c++rw +yl
Tp1g14640 16 RGPWSQDEDLKLISFIHKCGHENWRSLPKQAGLLRCGKSCRLRWINYL 63
89******************************99************97 PP
|
| 2 | Myb_DNA-binding | 53.9 | 4e-17 | 69 | 114 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg+++teE+e ++++++ +G++ W++Ia++++ gRt++++k+ w+++l
Tp1g14640 69 RGNFSTEEEETIIELHQSFGNK-WSKIASKLP-GRTDNEIKNVWHTHL 114
89********************.*********.************986 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009809 | Biological Process | lignin biosynthetic process |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis |
| GO:0003677 | Molecular Function | DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 270 aa
Download sequence Send
to blast |
MGKGRAPCCD KTKVKRGPWS QDEDLKLISF IHKCGHENWR SLPKQAGLLR CGKSCRLRWI 60
NYLRPDVKRG NFSTEEEETI IELHQSFGNK WSKIASKLPG RTDNEIKNVW HTHLKKRLSP 120
DTNHNATTQI SLNGEETSQE SSPNVSMSFG GSNIHSKEED VQIGQTFKYF QDYNEFTGML 180
QEVDKPELLE IPFDLDPDIW SFIDGSDSFQ QPENSLTPSA HQESEEDAVE KWFKHLESEL 240
GLEENVQQHH EANEDSSSSS LLESYELLIN
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional activator that binds DNA to the AC cis-elements 5'-ACCTACC-3', 5'-ACCAACC-3' and 5'-ACCTAAC-3' of promoters and specifically activates lignin biosynthetic genes during secondary wall formation mediated by SND1. {ECO:0000269|PubMed:19122102}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Slightly induced by light (PubMed:9839469). Regulated by the SND1 close homologs NST1, NST2, VND6, and VND7 and their downstream targets MYB46 and MYB83 (PubMed:19122102, PubMed:22197883). {ECO:0000269|PubMed:19122102, ECO:0000269|PubMed:22197883, ECO:0000269|PubMed:9839469}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AB493459 | 0.0 | AB493459.1 Arabidopsis thaliana At1g16490 mRNA for hypothetical protein, partial cds, clone: RAAt1g16490. |
| Publications
? help Back to Top |
- Fernández-Pérez F,Vivar T,Pomar F,Pedreño MA,Novo-Uzal E
Peroxidase 4 is involved in syringyl lignin formation in Arabidopsis thaliana.
J. Plant Physiol., 2015. 175: p. 86-94
[PMID:25506770] - Noda S, et al.
The expression of a rice secondary wall-specific cellulose synthase gene, OsCesA7, is directly regulated by a rice transcription factor, OsMYB58/63.
Planta, 2015. 242(3): p. 589-600
[PMID:26070439] - Takeuchi M,Kegasa T,Watanabe A,Tamura M,Tsutsumi Y
Expression analysis of transporter genes for screening candidate monolignol transporters using Arabidopsis thaliana cell suspensions during tracheary element differentiation.
J. Plant Res., 2018. 131(2): p. 297-305
[PMID:28921082]
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