PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g12950
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family G2-like
Protein Properties Length: 252aa    MW: 28779.9 Da    PI: 6.9587
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g12950genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.92e-322477255
    G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
               prlrWtpeLH++Fv+ave LGG+ kAtPk +l++m+vkgLt++hvkSHLQ+YR 
  Tp1g12950 24 PRLRWTPELHRSFVHAVELLGGQYKATPKLVLKIMDVKGLTISHVKSHLQMYRG 77
               8****************************************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-292077IPR009057Homeodomain-like
PROSITE profilePS5129411.9252080IPR017930Myb domain
TIGRFAMsTIGR015571.2E-222477IPR006447Myb domain, plants
SuperFamilySSF466892.33E-152476IPR009057Homeodomain-like
PfamPF002492.1E-82576IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MGRCGRSSDG GIGGVRPYVR SPVPRLRWTP ELHRSFVHAV ELLGGQYKAT PKLVLKIMDV  60
KGLTISHVKS HLQMYRGSKL TLLGRPEESS SSSSRRRRRR QDNEDHLHDN LSVHAKNDCL  120
LGFHSFNFRE QTSATDNDDD DFVNIMNMER RKTFASNGES IKFQSHHFLE DQSTKNNCWE  180
NEQEEEEEEE ELSLSLSLNH PHNSQQRWRS NASSTLSETS EAVSSPFIFR DCFASSKIDL  240
NLNLSFSSLL PS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-192579458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-192579458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A4e-192579357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-192579357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-192579357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-192579357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-192579458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-192579458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-192579458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-192579458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-192579458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-192579458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19499RRRRRR
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g12950
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ6304860.0AJ630486.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At1g14600.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020866305.11e-138putative Myb family transcription factor At1g14600 isoform X2
SwissprotQ700D91e-128MYBF_ARATH; Putative Myb family transcription factor At1g14600
TrEMBLD7KBM41e-134D7KBM4_ARALL; DNA binding protein
STRINGfgenesh2_kg.1__1592__AT1G14600.11e-135(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46941852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14600.11e-127G2-like family protein