PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp1g12810 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | ZF-HD | ||||||||
Protein Properties | Length: 257aa MW: 29407.2 Da PI: 8.1215 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 102.4 | 3e-32 | 33 | 88 | 4 | 60 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 ++YkeClkNhAa++Gg+a+DGCgEfmps ge+g+++al+C+AC+CHRnFHR+eve e Tp1g12810 33 IKYKECLKNHAAAMGGNATDGCGEFMPS-GEDGSIEALTCSACNCHRNFHRKEVEGE 88 79*************************9.999*********************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 7.9E-29 | 33 | 85 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 9.0E-30 | 33 | 95 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.3E-31 | 34 | 85 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.436 | 35 | 84 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 3.01E-19 | 152 | 220 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.0E-29 | 153 | 221 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 3.5E-27 | 159 | 215 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048574 | Biological Process | long-day photoperiodism, flowering | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MPLHGNGHGN NHDHHHQDPH HVSYNAIIKK PLIKYKECLK NHAAAMGGNA TDGCGEFMPS 60 GEDGSIEALT CSACNCHRNF HRKEVEGETT ATAISSYHQL PPPRKLMLNH HNIRSAMPHQ 120 MVMPIGVSNY RYMHNSESDD FMEEDGVTTA SRPPPYNQKK RFRTKFTPEQ KEKMLNFAEK 180 VGWKIQRQED CVVQRFCEEI GVKRRVLKVW MHNNKLHFSK KNDSNNINLE DNDNEKINNV 240 DNVDLSGTKD IMTKIAP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 3e-23 | 160 | 215 | 18 | 73 | ZF-HD homeobox family protein |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp1g12810 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493456 | 0.0 | AB493456.1 Arabidopsis thaliana At1g14440 mRNA for hypothetical protein, partial cds, clone: RAAt1g14440. | |||
GenBank | AY074266 | 0.0 | AY074266.1 Arabidopsis thaliana unknown protein (At1g14440) mRNA, complete cds. | |||
GenBank | AY096738 | 0.0 | AY096738.1 Arabidopsis thaliana unknown protein (At1g14440) mRNA, complete cds. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. | |||
GenBank | F14L17 | 0.0 | AC012188.2 Sequence of BAC F14L17 from Arabidopsis thaliana chromosome 1, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018436636.1 | 1e-180 | PREDICTED: zinc-finger homeodomain protein 4-like | ||||
Refseq | XP_018436637.1 | 1e-180 | PREDICTED: zinc-finger homeodomain protein 4-like | ||||
Swissprot | Q9M9S0 | 1e-157 | ZHD4_ARATH; Zinc-finger homeodomain protein 4 | ||||
TrEMBL | A0A397YBW9 | 1e-176 | A0A397YBW9_BRACM; Uncharacterized protein | ||||
STRING | Bra026830.1-P | 1e-177 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3339 | 26 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14440.2 | 1e-154 | homeobox protein 31 |