PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp1g12320 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | WRKY | ||||||||
Protein Properties | Length: 508aa MW: 54850.7 Da PI: 8.5504 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 108.9 | 2.4e-34 | 224 | 280 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDgynWrKYGqK+vkgsefprsYY+Ct +gCpvkkkvers d++v+ei+Y+g+Hnhe Tp1g12320 224 DDGYNWRKYGQKQVKGSEFPRSYYKCTNPGCPVKKKVERSL-DGQVTEIIYKGQHNHE 280 8****************************************.***************8 PP | |||||||
2 | WRKY | 103.8 | 9.5e-33 | 404 | 462 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC v+k+ver+a+d k+v++tYeg+Hnh+ Tp1g12320 404 LDDGYRWRKYGQKVVKGNPYPRSYYKCTTQGCGVRKHVERAATDAKAVVTTYEGKHNHD 462 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.1E-30 | 218 | 282 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.62E-26 | 222 | 282 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.6E-39 | 223 | 281 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.1E-26 | 224 | 280 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 24.857 | 224 | 282 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.7E-36 | 389 | 464 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.32E-29 | 396 | 464 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 37.964 | 399 | 464 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.7E-38 | 404 | 463 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.3E-25 | 405 | 462 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:1900150 | Biological Process | regulation of defense response to fungus | ||||
GO:1900425 | Biological Process | negative regulation of defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 508 aa Download sequence Send to blast |
MSEKEELPST SKSTGAPTRP TLSLPPRPFS EMFFNGGVGF SPGPMTLVSN MFSDSDEFRS 60 FSQLLAGAMA SPAAAAAASA AATASEGNHS SSGDVDPRFK QSRPTGLMIS QSPSMFTVPP 120 GLSPAMLLDS PSFLGLFSPV QGSYGMTHQQ ALAQVTAQAV QANANMQPQT EYPPSSQVQS 180 FSLGQPQNPT SAPDSSLLAP RETSDITIVE HRSQQPLNVD KPADDGYNWR KYGQKQVKGS 240 EFPRSYYKCT NPGCPVKKKV ERSLDGQVTE IIYKGQHNHE PPQNTKRGNK DSTANLNGSS 300 INNSRGTSEL AASQFQTSSF NKTKREQHEA ASQATTEQMS EASDSEEVGN GETGGREKAE 360 GEPDPKRRST DVRVSEPAAA VAASHRTVTE PRIIVQTTSE VDLLDDGYRW RKYGQKVVKG 420 NPYPRSYYKC TTQGCGVRKH VERAATDAKA VVTTYEGKHN HDLPAAKSSS HAAAAAQLRS 480 ENRLGGLSNL NQQQQPVARL RLKEEQII |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 6e-44 | 224 | 465 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 6e-44 | 224 | 465 | 8 | 78 | Probable WRKY transcription factor 4 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp1g12320 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF425835 | 0.0 | AF425835.1 Arabidopsis thaliana WRKY transcription factor 4 (WRKY4) mRNA, complete cds. | |||
GenBank | AY045676 | 0.0 | AY045676.1 Arabidopsis thaliana At1g13960/F7A19_5 mRNA, complete cds. | |||
GenBank | BT002629 | 0.0 | BT002629.1 Arabidopsis thaliana At1g13960/F7A19_5 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006417073.1 | 0.0 | probable WRKY transcription factor 4 | ||||
Refseq | XP_024008189.1 | 0.0 | probable WRKY transcription factor 4 | ||||
Swissprot | Q9XI90 | 0.0 | WRKY4_ARATH; Probable WRKY transcription factor 4 | ||||
TrEMBL | V4MU44 | 0.0 | V4MU44_EUTSA; Uncharacterized protein | ||||
STRING | XP_006417073.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1534 | 27 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13960.1 | 0.0 | WRKY DNA-binding protein 4 |
Publications ? help Back to Top | |||
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