PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

bHLH

Protein Properties

Length: 268aa MW: 30512.9 Da PI: 8.1673

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp1g11120	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	45.9	1e-14	75	127	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +r++h +Er+RR+++ s f +Lr +lP +++K s ++ + +Av+YIk+Lq Tp1g11120 75 KRAKHRDIERQRRQEVTSLFKNLRYILPFqY---TKGKRSSSDHVHEAVNYIKDLQ 127 79*************************66...*******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	6.54E-15	72	149	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.22E-10	72	131	No hit	No description
PROSITE profile	PS50888	13.516	74	126	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.5E-12	75	143	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.1E-12	75	127	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0064	80	132	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MDFAPSSLFT VDFADENELD FSSLITPSTF ISFQEPIPSN PIIHCAGTKN DGRQRICETT 60 MTDKITKEDV EPESKRAKHR DIERQRRQEV TSLFKNLRYI LPFQYTKGKR SSSDHVHEAV 120 NYIKDLQKKI KEVSEKRDRI KRSIIHPSST RECYIRSLAS SWPSPSSLSS YCSCAGDTHI 180 DVKVRACLVG IEIVASCCFR HECCLSSVLQ LLAQEQCLNV VNCISTRVHL RFIHTIVSEV 240 EKGIEVNFSE LRDKIIKIGT FKLSSYGS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	74	86	KRAKHRDIERQRR
2	126	141	QKKIKEVSEKRDRIKR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp1g11120

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salicylic acid (SA). {ECO:0000269\|PubMed:12679534}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF488589	3e-70	AF488589.1 Arabidopsis thaliana clone bHLH055 putative bHLH transcription factor mRNA, partial sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006417224.1	1e-149	transcription factor bHLH55
Swissprot	Q9LN95	1e-127	BH055_ARATH; Transcription factor bHLH55
TrEMBL	V4KZW8	1e-148	V4KZW8_EUTSA; Uncharacterized protein
STRING	XP_006417224.1	1e-148	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6228	18	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12540.1	1e-122	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Wisman E, et al. Knock-out mutants from an En-1 mutagenized Arabidopsis thaliana population generate phenylpropanoid biosynthesis phenotypes. Proc. Natl. Acad. Sci. U.S.A., 1998. 95(21): p. 12432-7 [PMID:9770503]