PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g09250
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 178aa    MW: 20454.9 Da    PI: 10.0361
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g09250genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.33.6e-051865254
               HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
               r+  n rE+ RR r+++ f  L +++ +      ++l   +   +A+ Y+ +L
  Tp1g09250 18 REQRNLREKDRRMRMKHLFIILSSHVSPT-----QRLPVPQLIDQATSYMIQL 65
               7789**********************987.....6888888888888887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.27E-101681IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.7471665IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.7E-61879IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00272271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MSREGERDIG AGSSMSPREQ RNLREKDRRM RMKHLFIILS SHVSPTQRLP VPQLIDQATS  60
YMIQLKEKVK LLKEKKKTLL GGEVGNRSEG LSSLLPKLSI YSRDSTIEMN LIMDSNMKRV  120
MLHELVSVFE EEGAQVMNAN LQNLSDRMII YTIIAQAIIC RIGIDPSRIE ERIRDIIF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12227LREKDR
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g09250
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013603852.17e-99PREDICTED: uncharacterized protein LOC106311173
RefseqXP_013682362.17e-99transcription factor bHLH167
SwissprotF4I4E12e-93BH167_ARATH; Transcription factor bHLH167
TrEMBLA0A3P6GHB21e-103A0A3P6GHB2_BRAOL; Uncharacterized protein (Fragment)
STRINGBo8g109420.13e-98(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23822167
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10585.15e-69bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]