PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g06920
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C2H2
Protein Properties Length: 344aa    MW: 39354.1 Da    PI: 8.6806
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g06920genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.1e-05187206120
                EEETTTTEEESSHHHHHHHH CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                + C++C+k+F+r  n++ H+
  Tp1g06920 187 FACSICSKTFNRYNNMQMHM 206
                78*****************9 PP
2zf-C2H210.90.0015272294123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C++Cgk    k + ++H +++
  Tp1g06920 272 FSCGKCGKALAVKGDWRTHEKNC 294
                89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.98E-9166210No hitNo description
PROSITE profilePS5015710.45187214IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.4E-5187206IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.17187209IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280189209IPR007087Zinc finger, C2H2
SMARTSM00355170235267IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.58E-5257292No hitNo description
SMARTSM00355190272292IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MSLRNLDEMG LSFESSSFIE WLKAPSSTSS SPSVLFRMMT KDVMSRSNHQ SQMNMLERSL  60
FLYQPQEQLN TNTTSIQCLP LLNKLMENKS QALDIIKGEK DDDVVTLQIG LPNYHRGNSV  120
EEDSDTTSDH HQKKPVKREI IEDCVVMMKK KRKMKFDEEM IDSDMEVCGK RFWIPSPAQI  180
HVGPMQFACS ICSKTFNRYN NMQMHMWGHG SEFRKGADSL KGTTQPAAIL RLPCYCCAEG  240
CKNNINHPRS KPLKDFRTLQ THYKRKHGSK PFSCGKCGKA LAVKGDWRTH EKNCGKLWYC  300
KCGSDFKHKR SLKDHIKSFG YGHSPHPSLS FGGFEEDTEC ITTE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g06920
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2544480.0AF254448.1 Arabidopsis thaliana WIP3 protein (WIP3) mRNA, complete cds.
GenBankAK1188510.0AK118851.1 Arabidopsis thaliana At1g08290 mRNA for unknown protein, complete cds, clone: RAFL21-18-A22.
GenBankAY0909180.0AY090918.1 Arabidopsis thaliana unknown protein (At1g08290) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013641101.10.0zinc finger protein WIP3-like
SwissprotQ9SGD10.0ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLV4L1A90.0V4L1A9_EUTSA; Uncharacterized protein
STRINGXP_006417709.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.10.0WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]