PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g06580
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family LBD
Protein Properties Length: 201aa    MW: 22412.3 Da    PI: 4.7566
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g06580genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260135.81.6e-42291281100
     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
                +CaaCk+lrr+C ++Cvlapyfp ++p+kf ++h++FGasn++kll++lpe++r+da++slvyeA ar+rdPvyG++g i +lq+q+++l+a+la+++ e
  Tp1g06580  29 PCAACKILRRRCGEKCVLAPYFPPTEPAKFTIAHRVFGASNIIKLLQELPESQRTDAVKSLVYEAGARIRDPVYGCAGAIYNLQRQVSELQAQLAKAQVE 128
                7**********************************************************************************************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.28528129IPR004883Lateral organ boundaries, LOB
PfamPF031952.2E-4229126IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MESNGEGSAA IIYASPTSSP PPPRVVLSPC AACKILRRRC GEKCVLAPYF PPTEPAKFTI  60
AHRVFGASNI IKLLQELPES QRTDAVKSLV YEAGARIRDP VYGCAGAIYN LQRQVSELQA  120
QLAKAQVEIV SMQFQRSNLL ELIHNMDQPN QEEHNMSFDS SFGNCDEFIS SPDEENTDFG  180
FREDKYSNTN SSMLWCDALW I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A9e-422813010112LOB family transfactor Ramosa2.1
5ly0_B9e-422813010112LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g06580
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018480879.11e-129PREDICTED: LOW QUALITY PROTEIN: LOB domain-containing protein 1-like
SwissprotQ9SK086e-98LBD11_ARATH; LOB domain-containing protein 11
TrEMBLA0A3N6REW41e-122A0A3N6REW4_BRACR; Uncharacterized protein
STRINGBra018675.1-P1e-120(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM114128105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28500.18e-97LOB domain-containing protein 11