PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g06260
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family GRAS
Protein Properties Length: 768aa    MW: 86054.4 Da    PI: 5.4181
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g06260genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS368.68.6e-1133927621373
       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                l++lL+ cA+avs +d + a+++L +++e++ p g+  +Rla+yf++ L+arla++++++y al++++ts    ++ l+a++++  v+P+ k + + aN+
  Tp1g06260 392 LRTLLVLCAQAVSVDDRRTANEMLRQIRENSWPLGNGSERLAHYFANSLEARLAGTGTQIYTALSSKKTS---AADMLKAYQTYISVCPFKKAAIIFANH 488
                5789**************************************************************9999...9************************** PP

       GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                 I++ + +++ +HiiDf+is+G+QWpaL++ L+ +++gpp+lRiTg++ p+ g   +e ++etg+rLa+++++ +vpfe+n+ +a+++e++++e+L++k+
  Tp1g06260 489 SIMRLTVNANVIHIIDFGISYGFQWPALIHRLSFKSGGPPMLRITGIELPQRGfrPAEGVQETGQRLARYCQRYKVPFEYNA-IAQKWETIKVEDLKIKE 587
                ***************************************************99*****************************.7**************** PP

       GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298
                gE ++Vn+ ++ ++llde+v ++s+rd+vLkl+++ +P+v++ +    ++n++ F++rf eal +ysalfd+ ++kl re+e r + E+e+ grei+nvv
  Tp1g06260 588 GEFVVVNSLFRFKNLLDETVVVNSPRDAVLKLIRKANPNVFIPAILSGSYNAPFFVTRFREALFHYSALFDMCDSKLTREDEMRLMFEKEFYGREIMNVV 687
                **************************************************************************************************** PP

       GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                aceg+er+er et+++W++r+ +aGF+++pl+++ +++ kl +++ +++ + v+++ ++l++gWk+r +++ S+W
  Tp1g06260 688 ACEGTERVERPETYKQWQARVIRAGFRQLPLEKELMQNLKLKIENRYDKNFDVDQNGNWLLQGWKGRIVYASSVW 762
                ***********************************************999************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.202366743IPR005202Transcription factor GRAS
PfamPF035143.0E-110392762IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 768 aa     Download sequence    Send to blast
MGSYSGGSLD GFGFSSEFAY SPGSNEALGL ANGFYLDEPF LDFASLDHSS APPPETYHPQ  60
RKNAASGDPF SSPSDDADFS DSVLKYISQV LMEEDMEEKP CMFHDALALQ AAEKSLYEAL  120
GEKYPSSSMD HRAYPEKLAH DSPDGSCSGG GGFSDYASTT TTTSSDSHWS VDGLENTRPS  180
WLQTPIPSNF VFQSTSRSNS ATDGGGNSAV FGSGFGDDLV SSMFRDSELA MQFKRGVEEA  240
SKFLPKSSQL FIDVENYIPK NSEFKENGSE VFVKIEKSDE AEHRNSAPPP NRLTGKKSHW  300
RDEDEDLVEE RSNKQSAVYI EETELSEMFD KILLCGNSSQ PVCILNQNFP TEPAKVETTQ  360
QIPTQSNGAK TRGKKPTANY TSNDSKKETA DLRTLLVLCA QAVSVDDRRT ANEMLRQIRE  420
NSWPLGNGSE RLAHYFANSL EARLAGTGTQ IYTALSSKKT SAADMLKAYQ TYISVCPFKK  480
AAIIFANHSI MRLTVNANVI HIIDFGISYG FQWPALIHRL SFKSGGPPML RITGIELPQR  540
GFRPAEGVQE TGQRLARYCQ RYKVPFEYNA IAQKWETIKV EDLKIKEGEF VVVNSLFRFK  600
NLLDETVVVN SPRDAVLKLI RKANPNVFIP AILSGSYNAP FFVTRFREAL FHYSALFDMC  660
DSKLTREDEM RLMFEKEFYG REIMNVVACE GTERVERPET YKQWQARVIR AGFRQLPLEK  720
ELMQNLKLKI ENRYDKNFDV DQNGNWLLQG WKGRIVYASS VWVPSSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-4939976626382Protein SCARECROW
5b3h_A2e-4939976625381Protein SCARECROW
5b3h_D2e-4939976625381Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g06260
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3529580.0AK352958.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-12-F16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006417795.10.0scarecrow-like protein 14
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLE4MWR10.0E4MWR1_EUTHA; mRNA, clone: RTFL01-12-F16
STRINGXP_006417795.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]