PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g05870
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family MYB_related
Protein Properties Length: 540aa    MW: 62184 Da    PI: 9.9644
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g05870genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.82.5e-08485530145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwq 45 
                      + +W+t E +  +++ +++G + Wk+I  + +   +Rt  ++k++++
        Tp1g05870 485 KVPWSTAETLAVLQGYEKYGAN-WKRIKDEYPilVRRTNGDIKDKFR 530
                      579*****************99.**********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.484480537IPR017930Myb domain
SuperFamilySSF466896.08E-7482532IPR009057Homeodomain-like
SMARTSM007172.1E-6484535IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-7485530IPR009057Homeodomain-like
PfamPF002493.2E-6485530IPR001005SANT/Myb domain
CDDcd116606.71E-12486534No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009941Cellular Componentchloroplast envelope
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MLPNGEDDSD LMRLVKELQA SLTRNDKLEK ENHELRQEVA RLRAQVSNLK AHDNERKSML  60
WKKLQSSYDG GNTDGSNLKA PESVKSKEVT NTNPKPTVKE QSTAIKPPPP PPRPSKTTLG  120
KRSVRRAPEV VELYRALTKR ESHMGNRINQ NGVLSPAFSG NMIGEIENRS KYLSDIKSDT  180
ERHRDHIHFL ISKVEAATFT DISEVETFVK WIDNELSSLV DERAVLKHFS KWPERKADSL  240
READCSYRGL KKLETEILSF KENPKEPLKQ ALQRIQSLQD RLEETVNSTE RMRDSTGKRY  300
RDFQIPWEWM LDTGLIGQLK YSSLRLAQAY MKRITNELES NGGGKEGNLM LQGVRFAYTI  360
HQFAGGFDEE TLSIFNALKK ITTSESQKID SWRSKGRFRR VLDDLNSQVT RLEQENDVAN  420
PSAPDTAPRP SLLERRTTAQ TYEWKDSIDD SDGETDDDGE VNNKSRRKRI VVSPLKRNQG  480
GRRTKVPWST AETLAVLQGY EKYGANWKRI KDEYPILVRR TNGDIKDKFR VEMRRQERHP
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g05870
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026841e-178CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF10K11e-178AC067971.5 Sequence of BAC F10K1 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009110958.10.0PREDICTED: protein CHUP1, chloroplastic
TrEMBLA0A397YFS10.0A0A397YFS1_BRACM; Uncharacterized protein
STRINGBra030671.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06910.17e-49TRF-like 7