PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp1g05090 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | LBD | ||||||||
Protein Properties | Length: 197aa MW: 22584.3 Da PI: 10.1496 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 111.2 | 7.3e-35 | 18 | 109 | 1 | 92 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 aCa+Ck++r+kC+++C+l+pyfpa+++k+f++vhk+FG+snv+k++++++ee+r+++ +sl++eA +r++dPv G++g +++++++l+ k+ Tp1g05090 18 ACASCKHQRKKCNNECILSPYFPARKTKEFQAVHKVFGVSNVQKMIRTVREEDRTKLSDSLTWEALWRQKDPVLGSYGEYRRISEELKLYKS 109 7************************************************************************************9998775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.226 | 17 | 117 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.0E-32 | 18 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MMQRNTNNIS NNSSSHQACA SCKHQRKKCN NECILSPYFP ARKTKEFQAV HKVFGVSNVQ 60 KMIRTVREED RTKLSDSLTW EALWRQKDPV LGSYGEYRRI SEELKLYKSL VHNQPLIGWD 120 NNQRVFNSNN RNGLAVNSST GSGGFSVNNN GVGVNRELIN GGYTSRNLQG GWEHFKQDQR 180 QQCYAVINGF KQHYLPL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-18 | 19 | 95 | 12 | 88 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-18 | 19 | 95 | 12 | 88 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00128 | DAP | Transfer from AT1G06280 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp1g05090 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB473865 | 1e-163 | AB473865.1 Arabidopsis thaliana ASL32 mRNA for ASYMMETRIC LEAVES2-like 32 protein, complete cds. | |||
GenBank | CP002684 | 1e-163 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. | |||
GenBank | F9P14 | 1e-163 | AC025290.3 Sequence of BAC F9P14 from Arabidopsis thaliana chromosome 1, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006417938.1 | 1e-126 | LOB domain-containing protein 2 | ||||
Swissprot | Q9LNB9 | 1e-120 | LBD2_ARATH; LOB domain-containing protein 2 | ||||
TrEMBL | V4MVQ1 | 1e-124 | V4MVQ1_EUTSA; Uncharacterized protein | ||||
STRING | XP_006417938.1 | 1e-125 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10539 | 26 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06280.1 | 1e-100 | LOB domain-containing protein 2 |