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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Tp1g01020 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
|
| Family |
bHLH |
| Protein Properties |
Length: 590aa MW: 65703 Da PI: 7.0914 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Tp1g01020 | genome | thellungiella | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 39.9 | 7.5e-13 | 433 | 478 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
+h e+Er+RR+++N++f Lr+++P+ + K++Ka+ L Av YI++L
Tp1g01020 433 NHVEAERQRREKLNQRFYALRSVVPNiS------KMDKASLLGDAVSYINEL 478
799***********************66......***************998 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 590 aa
Download sequence Send
to blast |
MNIGGVVWNE DDKAIVASLL GKRAIDYLLS SSVPNANLLM TVGSDENLQN KLSDLVERPN 60
ASNFSWNYAI FWQISRSKAG DLVLCWGDGS CREPKEGEKS EIVRILSMGR EEETHQTMRK 120
RVLQKLHALF GGLEEDNCAL RLDRVTDTEM FLLASMYFSF PRGEGGPGMC FDSGKPVWLP 180
DVVNSGSDYC VRSFLAKSAG IQTIVLVPTD IGVVELGSTR CLPESEESML SIRSSFSSNL 240
PPPVRVVTTA ALPVVVADKS DDNRTVTSSK IFGKDLHNSG FLRHHQTQQP QQHRQFREKL 300
TVRKMDDKVP KRVDAYPNNG NRYMFSNPST NNNTLLSPTW VQPEMYRRTN TVKEVPSTED 360
FKFLPLQQSS QRLPPPAQMQ IDFSGASSRA SENNSDGEGG AEWADVVGGD ESGNNRPRKR 420
GRRPANGRAE ALNHVEAERQ RREKLNQRFY ALRSVVPNIS KMDKASLLGD AVSYINELHA 480
KLKVMEAERE RLGYSSNPPI SLEPEVSVQT AGEDVTVRVN CPLGSHPASR IFHAFEESKV 540
EVISSQLEVP QDIVLHTFVI KSEELTKEKL ISAFSREQSS SVQSRTSSGR
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 5gnj_A | 2e-26 | 427 | 512 | 2 | 80 | Transcription factor MYC2 |
| 5gnj_B | 2e-26 | 427 | 512 | 2 | 80 | Transcription factor MYC2 |
| 5gnj_E | 2e-26 | 427 | 512 | 2 | 80 | Transcription factor MYC2 |
| 5gnj_F | 2e-26 | 427 | 512 | 2 | 80 | Transcription factor MYC2 |
| 5gnj_G | 2e-26 | 427 | 512 | 2 | 80 | Transcription factor MYC2 |
| 5gnj_I | 2e-26 | 427 | 512 | 2 | 80 | Transcription factor MYC2 |
| 5gnj_M | 2e-26 | 427 | 512 | 2 | 80 | Transcription factor MYC2 |
| 5gnj_N | 2e-26 | 427 | 512 | 2 | 80 | Transcription factor MYC2 |
| Search in ModeBase |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AK353331 | 0.0 | AK353331.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-24-P08. |
| Publications
? help Back to Top |
- Sasaki-Sekimoto Y,Saito H,Masuda S,Shirasu K,Ohta H
Comprehensive analysis of protein interactions between JAZ proteins and bHLH transcription factors that negatively regulate jasmonate signaling.
Plant Signal Behav, 2014. 9(1): p. e27639
[PMID:24394987] - Fonseca S, et al.
bHLH003, bHLH013 and bHLH017 are new targets of JAZ repressors negatively regulating JA responses.
PLoS ONE, 2014. 9(1): p. e86182
[PMID:24465948] - Ezer D, et al.
The G-Box Transcriptional Regulatory Code in Arabidopsis.
Plant Physiol., 2017. 175(2): p. 628-640
[PMID:28864470]
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