PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10029235m
Common NameEUTSA_v10029235mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family M-type_MADS
Protein Properties Length: 269aa    MW: 29976.4 Da    PI: 4.3481
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10029235mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF27.63.8e-091653340
                     --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
           SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
                     i  k    + f+kR  g++ KA+ L+ L da++av+  
  Thhalv10029235m 16 ITKKESLATAFTKRSYGLFSKASQLCLLSDAQIAVLAT 53
                     566666789**************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006612.25651IPR002100Transcription factor, MADS-box
SMARTSM004327.5E-9665IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-12779IPR002100Transcription factor, MADS-box
CDDcd002664.21E-17886No hitNo description
PfamPF003191.8E-91558IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MVKRGGNKRK IPMEKITKKE SLATAFTKRS YGLFSKASQL CLLSDAQIAV LATPPSSHSH  60
VSFFSFGHSS VDSLVSDFLK GKRPLPVARE ETREEDIGVI LARKDLGLGL WWEDEVLAKS  120
ENPQELNDAM KSMSTLLRKF KELRSGEALR SNPNSDQTLI PQSDNEKSET DQTLIPQTLI  180
PDDDLPANFN ENTEEQSKIV AICESFRVTE VKNNINNNND DKDLTGSLDV GYDQEVDIDQ  240
LIDFDMAFDA SAFDDCLFEG TQENTTEF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10029235m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006396884.10.0agamous-like MADS-box protein AGL97
TrEMBLV4L7L90.0V4L7L9_EUTSA; Uncharacterized protein
STRINGXP_006396884.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49420.18e-62M-type_MADS family protein