PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10029148m
Common NameEUTSA_v10029148mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family GRAS
Protein Properties Length: 581aa    MW: 63932 Da    PI: 5.4874
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10029148mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS324.12.7e-992105772374
             GRAS   2 velLlecAeavss.gdlelaqalLarlsel.aspdg..dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                      +e+Ll++Ae+++s gd+ laq +Larl+++ +sp g  +p++R+a+yf+eAL++ l++  ++  +  ++++ ++++ + ++aa+k fse+sP+l
  Thhalv10029148m 210 TEQLLKAAEVIESgGDTCLAQGILARLNQQlSSPVGgnKPFERAAFYFKEALHNLLLH--NNNNNNNASQTLNPYSLIFKIAAYKSFSEISPVL 301
                      689*********978999**********99899999778******************9..5566667788888899****************** PP

             GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp...egpp.slRiTgvgspesg.skeeleetgerLakfAeelgvpfefnv 180
                      +f+++t Nqa+le+++g  r+Hi+Dfdi++G+QW++L+q+L  R+   +gpp sl+iT+++sp+s+ ++ el  t+++L+++A+e++++++++v
  Thhalv10029148m 302 QFTNFTSNQALLESFQGFYRLHIVDFDIGYGGQWASLMQELVLRDnnnKGPPlSLKITVFASPASHdDQLELGFTQDNLKHLASEINISLDIQV 395
                      ********************************************988766777**********99999************************** PP

             GRAS 181 lvakrledl.eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273
                      l   +++ l +++  + + +Ea+aVnl+ + ++      +++s+ + +L++vk+lsP+++v++++ +++++ +F +++l++l+ ++al++sl+a
  Thhalv10029148m 396 L---SFDLLaSVSWPHSSDKEAVAVNLSAASFS------DMPSHLPLLLRFVKHLSPTIIVCSDRGCERTDLPFPQQLLHSLHSHAALLESLDA 480
                      9...555552334446777********995554......45777888*********************************************88 PP

             GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpL 367
                         ++ ++ +k+Er+l+++ei+++v+++ +     ++ +++W+++l ++GF+pv+ s+++++qa++l+++++++g++ve++++sl+l+W++ +L
  Thhalv10029148m 481 V-NANLDALQKIERFLIQPEIEKLVSNRSRP---IERPMMTWQAMLLQMGFSPVTHSNFTESQAECLVQRTPVRGFHVEKKHNSLLLCWQRTEL 570
                      7.5666999*******************999...55667******************************************************* PP

             GRAS 368 vsvSaWr 374
                      v vSaWr
  Thhalv10029148m 571 VGVSAWR 577
                      ******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098540.332184557IPR005202Transcription factor GRAS
PfamPF035149.5E-97210577IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
MPLPFEEFQG KVISYFSSSF YEKEEELLLL PFSSEPTSVL SPLTTSSSTV SSSHGGHSAV  60
GAAISGDATT DEQCGRMGLP GDWEQALPGD QDQDQSILRL IMGGDSQEDP SLELNNILQT  120
CSSSSSQSPA FHHHSADYTS LGFGLVDTGF GLDHSLFSEE EKPPPPPPPL LIHQSQAHFT  180
QSPAIFYGQH PPPAKRLNQG PPVSKQGVIT EQLLKAAEVI ESGGDTCLAQ GILARLNQQL  240
SSPVGGNKPF ERAAFYFKEA LHNLLLHNNN NNNNASQTLN PYSLIFKIAA YKSFSEISPV  300
LQFTNFTSNQ ALLESFQGFY RLHIVDFDIG YGGQWASLMQ ELVLRDNNNK GPPLSLKITV  360
FASPASHDDQ LELGFTQDNL KHLASEINIS LDIQVLSFDL LASVSWPHSS DKEAVAVNLS  420
AASFSDMPSH LPLLLRFVKH LSPTIIVCSD RGCERTDLPF PQQLLHSLHS HAALLESLDA  480
VNANLDALQK IERFLIQPEI EKLVSNRSRP IERPMMTWQA MLLQMGFSPV THSNFTESQA  540
ECLVQRTPVR GFHVEKKHNS LLLCWQRTEL VGVSAWRCRS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-2623457724375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10029148m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006396213.10.0scarecrow-like protein 6
SwissprotO813160.0SCL6_ARATH; Scarecrow-like protein 6
TrEMBLV4MYL90.0V4MYL9_EUTSA; Uncharacterized protein
STRINGXP_006396213.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM85742739
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.10.0GRAS family protein
Publications ? help Back to Top
  1. Bari A,Orazova S,Ivashchenko A
    miR156- and miR171-binding sites in the protein-coding sequences of several plant genes.
    Biomed Res Int, 2013. 2013: p. 307145
    [PMID:23936788]
  2. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]