PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10029137m
Common NameEUTSA_v10029137mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family B3
Protein Properties Length: 437aa    MW: 50111.1 Da    PI: 9.1898
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10029137mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.89.6e-1985171491
                      E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE. CS
               B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefe 91 
                       ++psd+ k + l+lpk+f++e+g++k+e k++ l  ++g +W   l  + ++g + l++GWk+FvkangL++g ++ ++ +g+  +f+
  Thhalv10029137m  85 FTLPSDYVKISSLTLPKPFLRENGINKPE-KKIYLLGKDGTKWPTSLL-KDNKGIMSLGSGWKDFVKANGLETGFTLKLMWEGTtPSFS 171
                      5679*******************999988.6****************4.55555689*****************999999776655554 PP
2B366.15.1e-21219313199
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      f+++++++d+l+++rl++pk+f++e++++k++  ++ l  ++g +W v+l ++ ++gr+ l++GW+ F++an+Lk g++++++    ++++++v
  Thhalv10029137m 219 FVTITITPDNLRKNRLRFPKQFVKENSMNKPG--MIYLLRKDGTKWMVNL-VQERDGRMSLGSGWRVFAEANDLKPGESFTLEAFF-EDTTPMV 308
                      88999*********************999666..8***************.68888899************************655.89999** PP

                      EEE-S CS
               B3  95 kvfrk 99 
                      +++r+
  Thhalv10029137m 309 RFIRT 313
                      99987 PP
3B342.71e-13344432495
                      E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
               B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                       ++ +d  + + l lp +f++++g++     ++tl  e+  +W  +l  + ++g++ l+ GW +F++ang+k g+ ++++++ ++++  v++
  Thhalv10029137m 344 LTLIPDDVRACKLHLPSQFMKANGINRL--GKITLLGENKMEWPAYL-LSTRDGTVALEYGWDGFCEANGVKLGEDFTLEFIYEQGTVTVLR 432
                      445567777788***********99844..48***************.57777789************************987444444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.73E-1676166IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.84482176IPR003340B3 DNA binding domain
SMARTSM010195.8E-2382176IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-1683166IPR015300DNA-binding pseudobarrel domain
PfamPF023627.4E-1784171IPR003340B3 DNA binding domain
CDDcd100179.62E-1987170No hitNo description
Gene3DG3DSA:2.40.330.103.6E-22208322IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.29E-20215316IPR015300DNA-binding pseudobarrel domain
CDDcd100175.95E-19217312No hitNo description
PROSITE profilePS5086315.199219314IPR003340B3 DNA binding domain
SMARTSM010198.5E-28219314IPR003340B3 DNA binding domain
PfamPF023621.1E-20219313IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.0E-17337435IPR015300DNA-binding pseudobarrel domain
CDDcd100171.11E-11341434No hitNo description
SuperFamilySSF1019368.83E-17341435IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.647341436IPR003340B3 DNA binding domain
SMARTSM010191.0E-18341435IPR003340B3 DNA binding domain
PfamPF023627.2E-13341434IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MAKSKLLHPQ SFHTLVPSNN NDDEELPRKK KLKKNRLDEK VSNEEEEDME SLMEVEKKKK  60
QSPKPKRRAV SYASYSPCHK RLVTFTLPSD YVKISSLTLP KPFLRENGIN KPEKKIYLLG  120
KDGTKWPTSL LKDNKGIMSL GSGWKDFVKA NGLETGFTLK LMWEGTTPSF SLWSSESASD  180
VEEEEEFSKD PSKIEKMRQD ENKKEERQRD STPSSQKQFV TITITPDNLR KNRLRFPKQF  240
VKENSMNKPG MIYLLRKDGT KWMVNLVQER DGRMSLGSGW RVFAEANDLK PGESFTLEAF  300
FEDTTPMVRF IRTECNNSEA SKKESVSKED TETRNRNTEQ FVTLTLIPDD VRACKLHLPS  360
QFMKANGINR LGKITLLGEN KMEWPAYLLS TRDGTVALEY GWDGFCEANG VKLGEDFTLE  420
FIYEQGTVTV LRFCSK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10029137m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006397056.10.0B3 domain-containing protein REM13
SwissprotP0CAP52e-99REM13_ARATH; B3 domain-containing protein REM13
TrEMBLV4L4F20.0V4L4F2_EUTSA; Uncharacterized protein
STRINGXP_006397056.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137801326
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24650.14e-96DNA binding;DNA binding;sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Bindschedler LV,Palmblad M,Cramer R
    Hydroponic isotope labelling of entire plants (HILEP) for quantitative plant proteomics; an oxidative stress case study.
    Phytochemistry, 2008. 69(10): p. 1962-72
    [PMID:18538804]
  2. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]