PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10029136m
Common NameEUTSA_v10029136mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family B3
Protein Properties Length: 376aa    MW: 42531 Da    PI: 9.349
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10029136mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B330.94.8e-10247342278
                      EEE-..-HHHHT.T-EE--HHH.HTT...............---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--T CS
               B3   2 fkvltpsdvlks.grlvlpkkfaeeh...............ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLke 76 
                      +k+l + dv+   +rl++p + + +                +++k+ ++  +l d++  +W v l+ +  ++r   y lt GW+e vkangLk+
  Thhalv10029136m 247 EKTLFKTDVNPGeSRLSMPSNELIQKdfltavefrvieediNNDKKMGIGAILVDQRDVKWGVMLKRWEMGKRswnYALTCGWNEIVKANGLKQ 340
                      555555555544455555555554445555557777777776667788899**************66444444468****************** PP

                      T- CS
               B3  77 gD 78 
                      gD
  Thhalv10029136m 341 GD 342
                      *9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037549.1E-38217334IPR005508B3 domain-containing protein
Gene3DG3DSA:2.40.330.108.0E-18243369IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.22E-17244362IPR015300DNA-binding pseudobarrel domain
CDDcd100175.95E-13245357No hitNo description
PROSITE profilePS5086310.912266363IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MYYSDHKAVA EKEITSRNFL CLVDAAVMLY EEELRRTEKS KCHTKKKTKT LSAKEEEEEE  60
RDKRIFRLFP RKTRTSVKKF ATRGNPQENL NGSSSSSSFL LDLNTIPADL ETRNPQNPCS  120
SSSSFLLNLN TNAADSETQN PQNPNGASSS SSSFLGNYNI AAEPKNTEMR NPRNPNSQSS  180
LSSCQTENKS RKRRVAQDIQ SKPKKAKVAT FSWKGRDTPE WLTLLMKEEN ESVVKWGERT  240
DLRLIFEKTL FKTDVNPGES RLSMPSNELI QKDFLTAVEF RVIEEDINND KKMGIGAILV  300
DQRDVKWGVM LKRWEMGKRS WNYALTCGWN EIVKANGLKQ GDDISIWSFR WGGLLCFALV  360
TPPPSMAQSS SSLAD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10029136m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006397124.10.0B3 domain-containing protein At3g25182
SwissprotQ9LSF71e-104Y3518_ARATH; B3 domain-containing protein At3g25182
TrEMBLV4L8B20.0V4L8B2_EUTSA; Uncharacterized protein
STRINGXP_006397124.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2731015
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05930.15e-49B3 family protein