 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Thhalv10029132m |
| Common Name | EUTSA_v10029132mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
|
| Family |
ERF |
| Protein Properties |
Length: 314aa MW: 34539.4 Da PI: 4.7397 |
| Description |
ERF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Thhalv10029132m | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 62.2 | 1.1e-19 | 109 | 158 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
+++GVr+++ +g+W+AeIrdp+ r r +lg+++taeeAa +++a+ +l+g
Thhalv10029132m 109 KFRGVRQRP-WGKWAAEIRDPT----RrVRLWLGTYDTAEEAAIVYDNAAIQLRG 158
89*******.**********84....34*************************98 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0042991 | Biological Process | transcription factor import into nucleus |
| GO:0048825 | Biological Process | cotyledon development |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 314 aa
Download sequence Send
to blast |
METEKKVSLQ RIKLTEHKTN SIVTTAITKP RILRISVTDP YATDSSSEEE DDFAEISRKR 60
RRVKKFVNEV VLESTVSEKE RPKKKTRGKT TKTTAESAAT PVAVTTARKF RGVRQRPWGK 120
WAAEIRDPTR RVRLWLGTYD TAEEAAIVYD NAAIQLRGPH ALTNFSPSPA PEQGEEASTE 180
MAEFTTKSGR ECLDSPVSVL QSPFSGASTS SIMVKEEISG ESTPTTEVKE EQSVNFSDSF 240
TDFSAPLFSD DDVFGFPTPI PDFYGGDLFG DDIFADMSFG FGPGSGSGFS SWHVEDHFQD 300
IGDLFGSDSM LAV*
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 57 | 61 | RKRRR |
| 2 | 57 | 64 | RKRRRVKK |
| 3 | 58 | 62 | KRRRV |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}. |
