PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

bHLH

Protein Properties

Length: 317aa MW: 35337.7 Da PI: 5.5062

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10028815m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.8	2.2e-14	113	164	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ ++ + a+i+ A+++Ik+L+ Thhalv10028815m 113 QRMTHIAVERNRRRQMNEHLNSLRSLMPPS---FLQRGDQASIVGGAIDFIKELE 164 79*************************9...89***************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	5.04E-12	111	168	No hit	No description
SuperFamily	SSF47459	6.54E-16	111	179	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.72	112	163	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-13	113	175	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.6E-12	113	164	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.9E-11	118	169	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MERVMSFGGL EDQFAQISET EIDEKIPFLQ MLQCIEPIAF STTEPNQILQ SLLQIQTLEP 60 ESCLTHETIK RDPGQTDDPV KDPKTENGAA TVKEKRKRKR TRAPKNKDEV ENQRMTHIAV 120 ERNRRRQMNE HLNSLRSLMP PSFLQRGDQA SIVGGAIDFI KELEQLSQTL EAEKQNEGAS 180 ENPKTASSSS SSSRACTNSS VSSVSTTSED GFTARFGGGE TAEVEATVIQ NHVSLKVRCK 240 RRKGQILRAI VSIEDLKLSI LHLTISSSFD YVFYSFNLKI EDECKIGGSA DEIATAVHQI 300 FEQINGEIMW SNLSRT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	113	124	RMTHIAVERNRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10028815m

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353101	0.0	AK353101.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-16-P03.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006396347.1	0.0	transcription factor bHLH57
Swissprot	Q9M128	1e-174	BH057_ARATH; Transcription factor bHLH57
TrEMBL	E4MX54	0.0	E4MX54_EUTHA; mRNA, clone: RTFL01-16-P03
TrEMBL	V4KIY2	0.0	V4KIY2_EUTSA; Uncharacterized protein
STRING	XP_006396347.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14696	17	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01460.1	1e-154	bHLH family protein

Link Out ? help Back to Top
Phytozome	Thhalv10028815m
Entrez Gene	18015113

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]