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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10028807m | ||||||||
Common Name | EUTSA_v10028806mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | MYB_related | ||||||||
Protein Properties | Length: 320aa MW: 35559.4 Da PI: 9.4783 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.8 | 2.8e-14 | 72 | 116 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT++E++++++a +++ + Wk+I + +g +t q++s+ qky Thhalv10028807m 72 RENWTEQEHDKFLEALHLFDRD-WKKIEAFIG-SKTVVQIRSHAQKY 116 789*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.64E-16 | 66 | 122 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.178 | 67 | 121 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-7 | 69 | 122 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.4E-17 | 70 | 119 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 2.0E-11 | 71 | 119 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.8E-12 | 72 | 116 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.11E-9 | 74 | 117 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MVSVNPRPAQ GFPIFDPVNM SLPGFNSAAP ESDGYGLAPI ATMPVTGRIG TTTFSEDSTT 60 KIRKPYTIKK SRENWTEQEH DKFLEALHLF DRDWKKIEAF IGSKTVVQIR SHAQKYFLKV 120 QKSGTNEHLP PPRPKRKATH PYPQKAPKIA LPSHAIGFLH ASNAPLLEPG FLYSSDSQSL 180 PAVCASSSSS RDHESTNPPK PVIEVEEPGE FATAIPKNHC NTTSSKEVTR RLRAVTEPND 240 GESCEKPLRM MPDFSEVYSF IGSVFDPNTS GHLQRLKQMD PINMETVLLL MRNLSVNLTS 300 PEFAEQRKLI SSYRSKALK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00423 | DAP | Transfer from AT4G01280 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10028807m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ937212 | 2e-90 | AJ937212.1 Arabidopsis thaliana mRNA for myb transcription factor LHY-CCA1-like4 (lcl4 gene). | |||
GenBank | AY519513 | 2e-90 | AY519513.1 Arabidopsis thaliana MYB transcription factor (At4g01280) mRNA, complete cds. | |||
GenBank | BT024711 | 2e-90 | BT024711.1 Arabidopsis thaliana At4g01280 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006396282.1 | 0.0 | protein REVEILLE 5 isoform X1 | ||||
Swissprot | C0SVG5 | 1e-165 | RVE5_ARATH; Protein REVEILLE 5 | ||||
TrEMBL | V4MYS2 | 0.0 | V4MYS2_EUTSA; Uncharacterized protein | ||||
STRING | XP_006396282.1 | 0.0 | (Eutrema salsugineum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01280.2 | 1e-165 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10028807m |
Entrez Gene | 18015191 |
Publications ? help Back to Top | |||
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