PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10028806m
Common NameEUTSA_v10028806mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB_related
Protein Properties Length: 321aa    MW: 35632.5 Da    PI: 9.4783
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10028806mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.82.8e-1472116147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT++E++++++a +++  + Wk+I + +g  +t  q++s+ qky
  Thhalv10028806m  72 RENWTEQEHDKFLEALHLFDRD-WKKIEAFIG-SKTVVQIRSHAQKY 116
                      789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.64E-1666122IPR009057Homeodomain-like
PROSITE profilePS5129415.17867121IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.9E-769122IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-1770119IPR006447Myb domain, plants
SMARTSM007172.0E-1171119IPR001005SANT/Myb domain
PfamPF002492.8E-1272116IPR001005SANT/Myb domain
CDDcd001674.14E-974117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MVSVNPRPAQ GFPIFDPVNM SLPGFNSAAP ESDGYGLAPI ATMPVTGRIG TTTFSEDSTT  60
KIRKPYTIKK SRENWTEQEH DKFLEALHLF DRDWKKIEAF IGSKTVVQIR SHAQKYFLKV  120
QKSGTNEHLP PPRPKRKATH PYPQKAPKSV ALPSHAIGFL HASNAPLLEP GFLYSSDSQS  180
LPAVCASSSS SRDHESTNPP KPVIEVEEPG EFATAIPKNH CNTTSSKEVT RRLRAVTEPN  240
DGESCEKPLR MMPDFSEVYS FIGSVFDPNT SGHLQRLKQM DPINMETVLL LMRNLSVNLT  300
SPEFAEQRKL ISSYRSKALK *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00423DAPTransfer from AT4G01280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10028806m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ9372122e-90AJ937212.1 Arabidopsis thaliana mRNA for myb transcription factor LHY-CCA1-like4 (lcl4 gene).
GenBankAY5195132e-90AY519513.1 Arabidopsis thaliana MYB transcription factor (At4g01280) mRNA, complete cds.
GenBankBT0247112e-90BT024711.1 Arabidopsis thaliana At4g01280 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006396282.10.0protein REVEILLE 5 isoform X1
SwissprotC0SVG51e-167RVE5_ARATH; Protein REVEILLE 5
TrEMBLV4KIR60.0V4KIR6_EUTSA; Uncharacterized protein
STRINGXP_006396282.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12902893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01280.21e-166MYB_related family protein
Publications ? help Back to Top
  1. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]