PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10028696m
Common NameEUTSA_v10028696mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family B3
Protein Properties Length: 412aa    MW: 47229.5 Da    PI: 4.8275
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10028696mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.71.9e-171096193
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
               B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93
                     ffkv+   ++++s+ + +p ++ +e       + t +l+ + g sW+v +  + k +++ +++GW eFvk+n L +gDf++F ++g+s fe  
  Thhalv10028696m 10 FFKVF--ISHFSSDSMLIPISYYDELP--RLLPETAILQGTGGCSWNVAM--NLKEEEVCFEQGWPEFVKDNSLIDGDFLTFVYNGDSVFEVS 96
                     89999..99999999********8884..446779***************..99999*****************************9999544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.6E-204102IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.18E-215103IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.078101IPR003340B3 DNA binding domain
CDDcd100173.38E-15898No hitNo description
SMARTSM010191.9E-1610101IPR003340B3 DNA binding domain
PfamPF023624.7E-151095IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-4314406IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.3317409IPR003340B3 DNA binding domain
SuperFamilySSF1019368.24E-6325406IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MDATDTPPRF FKVFISHFSS DSMLIPISYY DELPRLLPET AILQGTGGCS WNVAMNLKEE  60
EVCFEQGWPE FVKDNSLIDG DFLTFVYNGD SVFEVSIYGL HGCKENRAVT EVEEDDKEDS  120
TCFLSSDDTN TSSESEMATA IPRSKNKGKE EDSDDSDDSV HSLNSEDTET ETEKNKGKPK  180
EKVMEEDIDF SLDSEETETE GSEFKNVNTI RRSKNKGKKK VEVVESSDED TDSDYIEAFS  240
RLDFEENSNS DSSYSPDCED TSAHVKPKVT NPKKKGKSIV STGESSHRVE PSKRREKVKR  300
KIKNPEVYLD DPNNVHFETG VKNRKYELLV HAQLVKDYCL RFQEYISYID PKGKLEAKTA  360
RWRDQRVCIK RWKRICDRNK LKKNDRIVCE ILRNQDLVYA IKVHIVRGIY L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A2e-15910310104At1g16640
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1271277PKKKGKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10028696m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006396490.10.0B3 domain-containing protein At4g34400
SwissprotQ9SZ051e-122Y3440_ARATH; B3 domain-containing protein At4g34400
TrEMBLV4LDS20.0V4LDS2_EUTSA; Uncharacterized protein
STRINGXP_006396490.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65551641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34400.11e-112B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Richter R, et al.
    Floral regulators FLC and SOC1 directly regulate expression of the B3-type transcription factor TARGET OF FLC AND SVP 1 at the Arabidopsis shoot apex via antagonistic chromatin modifications.
    PLoS Genet., 2019. 15(4): p. e1008065
    [PMID:30946745]