PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10028687m | ||||||||
Common Name | EUTSA_v10028687mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | bHLH | ||||||||
Protein Properties | Length: 421aa MW: 46342.7 Da PI: 8.366 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 49 | 1.1e-15 | 233 | 278 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ Er+RRd+iN+++ +L++l+P++ K +Ka++L +++eY+k+Lq Thhalv10028687m 233 HNQSERKRRDKINQRMKTLQKLVPNS-----SKTDKASMLDEVIEYLKQLQ 278 9************************8.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.09E-18 | 226 | 289 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.815 | 228 | 277 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.8E-13 | 233 | 278 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.85E-17 | 233 | 282 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 8.3E-18 | 233 | 287 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.4E-18 | 234 | 283 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009567 | Biological Process | double fertilization forming a zygote and endosperm | ||||
GO:0009506 | Cellular Component | plasmodesma | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 421 aa Download sequence Send to blast |
MSQRVPSWHI DGTPPVTVRS TKAANIPMYV PFLLTIYIIC LVYIYDSIYI LCRLDYEVAE 60 LTWENGQLGL HGLGPPRVPA HSKYSTGAGG TLESIVDQAT RFPNPKPTDD LVPWFHHRSS 120 RAAMDALVPE QQSQHVGSCS DGHHMAGKKR ARVAPEWSAS GSQRLTMDTY GFTSTSLDDN 180 SSSGGKPCTK TTTIDDHDSV CHSRPQMEEE EGEKQGGGKS SVSTKRSRAA AIHNQSERKR 240 RDKINQRMKT LQKLVPNSSK TDKASMLDEV IEYLKQLQAQ VSMMSRMNMP SMMLPMAMQQ 300 HQQQQFQLSL MSNPMGLGIG MGMPGLGLLD LNSMNRVAAA AATPPNIHAN MMPNPFVPIT 360 SPSWDASSSN DTRFQSPLIP DPMAAFLACS SQPTTMESYS RMAALYQQMQ QQLPPPSNQK 420 * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 236 | 241 | ERKRRD |
2 | 237 | 242 | RKRRDK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required during the fertilization of ovules by pollen. {ECO:0000269|PubMed:15634699}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00034 | PBM | Transfer from AT4G00050 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10028687m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK117229 | 0.0 | AK117229.1 Arabidopsis thaliana At4g00050 mRNA for putative bHLH transcription factor (bHLH016), complete cds, clone: RAFL16-78-C08. | |||
GenBank | BT025971 | 0.0 | BT025971.1 Arabidopsis thaliana At4g00050 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006396203.1 | 0.0 | transcription factor UNE10 | ||||
Swissprot | Q8GZ38 | 0.0 | UNE10_ARATH; Transcription factor UNE10 | ||||
TrEMBL | V4L5S6 | 0.0 | V4L5S6_EUTSA; Uncharacterized protein | ||||
STRING | XP_006396204.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3919 | 24 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00050.1 | 1e-163 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10028687m |
Entrez Gene | 18014728 |
Publications ? help Back to Top | |||
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