PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10028684m
Common NameEUTSA_v10028684mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family NAC
Protein Properties Length: 424aa    MW: 47779.2 Da    PI: 7.0432
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10028684mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM131.46.6e-4161333128
              NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      +G+rF Pt eel+++yLk+k+ gk+  ++++i+e++i+++eP  Lp  +k+++e+  wyfFs+++ ++a+++ ++r+t+ g+Wk+tgkd+++++
  Thhalv10028684m   6 VGYRFCPTGEELINHYLKNKILGKSWLVDDAISEINICSYEPICLPslSKIESEDPVWYFFSPKEYTSAKKNATKRTTRFGFWKSTGKDRKIKD 99 
                      7************************999999***************5448888999************************************** PP

              NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      k+ge +g kktLv+++gr+p+g+ t+Wv+hey++
  Thhalv10028684m 100 KRGEIIGNKKTLVYHEGRSPNGVGTRWVIHEYEI 133
                      ********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100543.24151IPR003441NAC domain
SuperFamilySSF1019412.75E-445151IPR003441NAC domain
PfamPF023654.1E-236133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MEKNLVGYRF CPTGEELINH YLKNKILGKS WLVDDAISEI NICSYEPICL PSLSKIESED  60
PVWYFFSPKE YTSAKKNATK RTTRFGFWKS TGKDRKIKDK RGEIIGNKKT LVYHEGRSPN  120
GVGTRWVIHE YEITCLPLQQ RKYVICKVMY NGEEGGDIFF GNNTNETTSY SLVSDPKAVG  180
SINTVPEVMQ AGQEDVLYVN DLSISMNEQE HLGFNPDTFF SDYNPTLQPQ APDYDDQYIT  240
RLLDFNGGDF EGVISDQELI MMTNNNDHRP RKPLSGIIVD YSSESDAESI SATSYQGTTS  300
PGDSVGSSNK HFPSCSSSDS CKDLQTCVDP SISKKIKKSQ VTVPLKQEVK EGKSKAVDAS  360
IDKKTEKKCW FIVEEAMQRK GKKTPRFIYL VNMILGFILL VALIGTSCRF FTNRQNLNPV  420
MKF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-22713318140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Involved in salt stress response during seed germination and seedling growth. Binds the auxin-responsive IAA30 gene promoter and may serve as a molecular link that interconnects a developmental feedback loop of auxin signaling with a salt signal transduction pathway during seed germination (PubMed:21450938). {ECO:0000269|PubMed:21450938}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00426DAPTransfer from AT4G01550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10028684m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress and abscisic acid (ABA) in roots. {ECO:0000269|PubMed:21450938}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006396352.10.0NAC domain-containing protein 69
SwissprotQ9M1261e-161NAC69_ARATH; NAC domain-containing protein 69
TrEMBLV4KIY80.0V4KIY8_EUTSA; Uncharacterized protein
STRINGXP_006396352.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19821971
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01550.11e-163NAC domain containing protein 69
Publications ? help Back to Top
  1. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]
  2. He L, et al.
    Arabidopsis ANAC069 binds to C[A/G]CG[T/G] sequences to negatively regulate salt and osmotic stress tolerance.
    Plant Mol. Biol., 2017. 93(4-5): p. 369-387
    [PMID:27975189]