 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Thhalv10028616m |
| Common Name | EUTSA_v10028616mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
|
| Family |
WRKY |
| Protein Properties |
Length: 488aa MW: 53640.4 Da PI: 6.6957 |
| Description |
WRKY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Thhalv10028616m | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | WRKY | 98.2 | 5.2e-31 | 234 | 293 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
++Dg++WrKYGqK+ kg+++pr+YYrCt++ gCpv+k+v+r+aed++++++tYeg+Hnh+
Thhalv10028616m 234 VNDGCQWRKYGQKMAKGNPCPRAYYRCTMSvGCPVRKQVQRCAEDTTILTTTYEGNHNHP 293
58****************************9****************************7 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 488 aa
Download sequence Send
to blast |
MEEHTQDRRE IAFLDSGEFL ESTSKDDQPN ESLLEHHHKP SIKEVDFFAA KSQPYNPSYM 60
RTTSIVGSSG FNDELVLVNS SLGTSSDDGD DKTKTQISRL KVELERLHEE NHKLKHLLAE 120
ISESYNDLQS RVLLARQTQV EGHHNHEDIT QAVYSQALQD RRPMDMNNEI PATTLKRRSP 180
DDVDDRDLHR GSSKSPRLDQ NKSTNHEEQQ IPHDQLPFRK ARVSVRARSD ATTVNDGCQW 240
RKYGQKMAKG NPCPRAYYRC TMSVGCPVRK QVQRCAEDTT ILTTTYEGNH NHPLPPSATA 300
MAATTSAAAA MLLSGSTTSN LHQTLSTPSA TSSSPSSFYH NFPYTSTIAT LSASAPFPTI 360
TLDLTNPPRP LQPPPLPPQF LSQYGPTAFL PNANQIRFNI NNHPQLLLPN MLGPQAPPRD 420
MVDTVRAAIA MDPNFTAALA AAISSIIGGG NDNNNNNNNN KVDSKSGGSS NGDSPQLPQS 480
CTTFSTN*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
