PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

HB-other

Protein Properties

Length: 507aa MW: 56519.1 Da PI: 9.5935

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10028592m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59	7.5e-19	19	74	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +kR t+ q+ +Le+++++++yps+e++++LA++++Lte+qV+ WF+ rR k+k+ Thhalv10028592m 19 KKRKLKTPIQIMALENFYNEHKYPSEEMKAQLAEEIELTEKQVSGWFCHRRLKDKR 74 8999**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.5E-19	8	74	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.56E-17	15	77	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.665	15	75	IPR001356	Homeobox domain
SMART	SM00389	8.8E-19	17	79	IPR001356	Homeobox domain
Pfam	PF00046	1.9E-16	19	74	IPR001356	Homeobox domain
CDD	cd00086	4.84E-17	19	75	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 507 aa Download sequence Send to blast
MLSGEVPADG DKTSAENSKK RKLKTPIQIM ALENFYNEHK YPSEEMKAQL AEEIELTEKQ 60 VSGWFCHRRL KDKRSVKEDG NTIGSQDRSS VVLQDRGSGL RQDSCGSTKQ TDYSNPKPRE 120 VESQRLYGGS YMGNAGGEDS TSSERSSSLH KILVSSKDGV RDVESLRYVA RSDVVQHPLV 180 MKSYGYNKPS GYLKLKGETE NVAITAVKRQ LGRQYREDGP PLGVEFDPLP PGAFEPQTNI 240 IVHEPIYVGN QRRSQPPYLT GTKKSINPGS SYELTRKSKM HSPDPYSEDD DDGDDNMMVG 300 MEPGLRDKQR IREPRLKPPS LGYSNPVSGH KPFKETFKGS VREIPLTNIK KSRISAKSRP 360 EGSRNHLIPN FHNLSGRDIE TNQTHDYDKN IFNGGRKSGH LTESSKLLPL SSSRSPDSVE 420 RGLSSGMVGK YYGERNHMKM HREKLHSTDE PPVTKRLKHG YLQQVYAPKS SNSEILGRKG 480 QIIRSGVELP SSFSGDETAE SSSSMD*

Sequence ? help Back to Top

Protein Sequence Length: 507 aa Download sequence Send to blast

MLSGEVPADG DKTSAENSKK RKLKTPIQIM ALENFYNEHK YPSEEMKAQL AEEIELTEKQ  60
VSGWFCHRRL KDKRSVKEDG NTIGSQDRSS VVLQDRGSGL RQDSCGSTKQ TDYSNPKPRE  120
VESQRLYGGS YMGNAGGEDS TSSERSSSLH KILVSSKDGV RDVESLRYVA RSDVVQHPLV  180
MKSYGYNKPS GYLKLKGETE NVAITAVKRQ LGRQYREDGP PLGVEFDPLP PGAFEPQTNI  240
IVHEPIYVGN QRRSQPPYLT GTKKSINPGS SYELTRKSKM HSPDPYSEDD DDGDDNMMVG  300
MEPGLRDKQR IREPRLKPPS LGYSNPVSGH KPFKETFKGS VREIPLTNIK KSRISAKSRP  360
EGSRNHLIPN FHNLSGRDIE TNQTHDYDKN IFNGGRKSGH LTESSKLLPL SSSRSPDSVE  420
RGLSSGMVGK YYGERNHMKM HREKLHSTDE PPVTKRLKHG YLQQVYAPKS SNSEILGRKG  480
QIIRSGVELP SSFSGDETAE SSSSMD*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10028592m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006396554.1	0.0	uncharacterized protein LOC18014314
TrEMBL	V4L6S2	0.0	V4L6S2_EUTSA; Uncharacterized protein
STRING	XP_006396554.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12202	25	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	0.0	HB-other family protein

Link Out ? help Back to Top
Phytozome	Thhalv10028592m
Entrez Gene	18014314