PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10028282m
Common NameEUTSA_v10028282mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family M-type_MADS
Protein Properties Length: 390aa    MW: 44174.1 Da    PI: 5.3733
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10028282mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF73.81.4e-231563250
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                     ++ ++s + ++ ++R+++i+KKA+ELS+LCd+ev+vi ++++g+l++++
  Thhalv10028282m 15 SSTSNSLAATSMTNRLETIFKKAYELSTLCDVEVCVIHYGPDGELKTWP 63
                     67788999****************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.00191365IPR002100Transcription factor, MADS-box
CDDcd002666.00E-162390No hitNo description
PfamPF003194.8E-142462IPR002100Transcription factor, MADS-box
PROSITE profilePS5006611.0172466IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.71E-162598IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MRSSPSFSCS SSSSSSTSNS LAATSMTNRL ETIFKKAYEL STLCDVEVCV IHYGPDGELK  60
TWPEDRQKVR DIAGRFSQLD EAKRRKKSVD LYGFLEKNKT KMTNLTKKTK RDELKYPISD  120
HYSPDQISQL IQSLELSYSK LQERLRFLET QNQKKTNLED HKGLSRPMSL NHQDHHQTQS  180
LNPSKFSLVI YNHEDALLSQ IPLSASTFNH SVPTQFTNYT GDYSMNQELY GCDQNMFMVQ  240
ESVSIYGLNQ LMQHELNGYD QNMCMSDITK GNYFQHPFVS NTQDYSSASQ EFANNYGLNQ  300
LMPKELHSYD QNMCMNDITN SNVQDPCLSS TVSDAVCSDF QDPYGSMVGN TSFSQDLSDM  360
FSSYDVQCAN TSSLLQTSTL PSLYTIPNC*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10028282m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024014365.10.0agamous-like MADS-box protein AGL75
SwissprotQ9FLL05e-93AGL75_ARATH; Agamous-like MADS-box protein AGL75
TrEMBLV4LT960.0V4LT96_EUTSA; Uncharacterized protein
STRINGXP_006405556.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56620126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41200.11e-94AGAMOUS-like 75
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]