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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10028184m | ||||||||
Common Name | EUTSA_v10028184mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 336aa MW: 37783.1 Da PI: 7.9528 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 73.7 | 1.5e-23 | 30 | 78 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 ++ ++s + ++ +kR+ +i+KKA+ELS+LCd+ev+vi ++++g+l++++ Thhalv10028184m 30 SSASNSLAATSMTKRLDTIFKKAYELSTLCDVEVCVIHYGPDGELKTWP 78 6788999*****************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 6.5E-6 | 13 | 80 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 11.788 | 39 | 81 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.75E-17 | 39 | 113 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.6E-15 | 39 | 77 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 2.59E-17 | 42 | 105 | No hit | No description |
PRINTS | PR00404 | 1.5E-5 | 43 | 58 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-5 | 58 | 79 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 336 aa Download sequence Send to blast |
MRSSPSSSCF SSSSSSKITM RSSPPSSCSS SASNSLAATS MTKRLDTIFK KAYELSTLCD 60 VEVCVIHYGP DGELKTWPED RQKVRDIAQR YSQLDEDKRR KKSVDLYGFL EKNKTKMANL 120 TKKTKRDELK YPISDHYSPD QISQLIQSLE LNYSKLQERL RFLEAQNQKK TNLEDHRGLR 180 TRPMSLNHQD HHQTQSLNPS KFSLLIYNHE DATLSQIPLS ASTLNQLTSY TGDYSAVQES 240 RLKNQELYGC DQNMSMGNIS SKDFPHPCVS NTQGYSTVQG FANHYGLNNL MRQEPNGGDQ 300 NMCMSGGSTS NNVQDPCLSN TIPLITNCYD YEAIT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10028184m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024014589.1 | 0.0 | agamous-like MADS-box protein AGL75 | ||||
Swissprot | Q9FLL0 | 2e-95 | AGL75_ARATH; Agamous-like MADS-box protein AGL75 | ||||
TrEMBL | V4M452 | 0.0 | V4M452_EUTSA; Uncharacterized protein | ||||
STRING | XP_006405555.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM566 | 20 | 126 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41200.1 | 6e-95 | AGAMOUS-like 75 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10028184m |
Entrez Gene | 18022475 |
Publications ? help Back to Top | |||
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