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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10027901m | ||||||||
Common Name | EUTSA_v10027901mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | NAC | ||||||||
Protein Properties | Length: 244aa MW: 28748.2 Da PI: 3.8895 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 70.7 | 3.8e-22 | 8 | 144 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lp+GfrF+Ptd e+ +++L++k+ g+++++ v +e+ di++ P+dLp + +ek+wyf++++ k + t ++ + ++ +W + ++++vl Thhalv10027901m 8 LPVGFRFRPTDCEISNYFLTRKALGQPMNTRIVPEEChDIFSRRPRDLPG--YPREKHWYFYCRKLKDQVTT--TTNTSSHNIWTQIEEETDVL 97 79****************************77788889***********4..35789*******99988764..333445689*********** PP NAM 94 sk..kgelvglkktLvfy..........kgrapkgektdWvmheyrl 128 ++ +++lvg+k+++++ +++++ k +W+m+e +l Thhalv10027901m 98 DAknNDALVGIKRSFTLVendeesddiyLSDEEEPPKYNWFMDEISL 144 98656667**********555544444337788888*******9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.05E-27 | 7 | 161 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 29.157 | 8 | 161 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.5E-13 | 9 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MEPKLRALPV GFRFRPTDCE ISNYFLTRKA LGQPMNTRIV PEECHDIFSR RPRDLPGYPR 60 EKHWYFYCRK LKDQVTTTTN TSSHNIWTQI EEETDVLDAK NNDALVGIKR SFTLVENDEE 120 SDDIYLSDEE EPPKYNWFMD EISLPLTVAD TDWVFCHVFR KKIKPETVDL PFIESGSESE 180 DEEEEEEQEQ EEQEEQEQEQ EEEEEEEEEE EEQEEVEESV SAESLDLFRE QDENVLPPSP 240 SPP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10027901m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006405394.1 | 1e-175 | NAC domain-containing protein 104 | ||||
TrEMBL | V4LWE1 | 1e-174 | V4LWE1_EUTSA; Uncharacterized protein | ||||
STRING | XP_006405394.1 | 1e-175 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8604 | 17 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56520.1 | 1e-89 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10027901m |
Entrez Gene | 18022967 |