PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10027663m
Common NameEUTSA_v10027663mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB_related
Protein Properties Length: 708aa    MW: 80697.1 Da    PI: 7.1251
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10027663mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.34.1e-09496539147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +g WT+e+ + l++++k++G++ Wk+ a  mg  + + ++k+ w+ +
  Thhalv10027663m 496 KGVWTKEDFDMLIEYHKKHGSD-WKALADAMG--KHRRHVKDAWRRV 539
                      799*******************.********9..6778899988875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.054418486IPR017877Myb-like domain
SMARTSM007170.24422493IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.7E-4422483IPR009057Homeodomain-like
PROSITE profilePS500907.317491540IPR017877Myb-like domain
SMARTSM007179.2E-5495542IPR001005SANT/Myb domain
SuperFamilySSF466892.66E-7495539IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-7495538IPR009057Homeodomain-like
CDDcd001670.00296499539No hitNo description
PfamPF139212.3E-10499558No hitNo description
PROSITE profilePS500906.795542610IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.7E-4543612IPR009057Homeodomain-like
PROSITE profilePS500907.178612665IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 708 aa     Download sequence    Send to blast
MGKESKKSEN RVESEGTVEE RNSTKKKKKK KSREKKDSFG GENGETAAFE GEKLGEGAPA  60
KKISEKKRVN SEADDDGVKK SKKSKKRADS GANADDGGEK SEKKRVDSED NADDGGKKLE  120
KKWADSEANA DDGGKKSEKK RADSEAEDGE KKSKKKSKEK MVDSEAEDDG VKKSKKRYKE  180
KSVDSEAESD GVKKSKKKKK SKKESGGDEI GNSEESQSDG KRETGKRKRD EGGLGAEENT  240
ENSDKETNRK SKKKKPCVNP EVEEEMKDSA KDAKKKQSED SEAEGNDLNS TKDAKKKRKK  300
KKQSEDPEAE ENNNDSTQDA KKKQNSEAGE NDLNSTKDAK KKGKKKKKQR EDPESEENNK  360
EEATKKRKKK CSKSDENVTT PSSKSTKKVK FSDQVEVFPA EDEESEEEEQ EEEEEEGVEL  420
VRGNRFTKEE DELIKKAVLE YVDNHALGDE GVNMIMNCRS HPQIRGCWKE ITAALPWRPH  480
SGVYHRAHTL FEEGSKGVWT KEDFDMLIEY HKKHGSDWKA LADAMGKHRR HVKDAWRRVR  540
MASKKKKGHW SRQEYQTLFE LVNKDIRMKA FQEKRSKHGM LRDNIPWMAI SDQLETRDHT  600
ICCVKWYDQL QSPMVAKGIW ANVDDYRLMD ELTNLDAACV DDVDWDNLLD NRDGEACRKR  660
WDQMVRNIGF PGTKTFAEQV EILSERYCPD LAEDREDFDN RPFDPED*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12635KKKKKSREKK
2247254NRKSKKKK
3295301KKRKKKK
4342348GKKKKKQ
5345367KKKQREDPESEENNKEEATKKRK
6364368KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10027663m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006405405.10.0ABC transporter F family member 4
TrEMBLV4M3N10.0V4M3N1_EUTSA; Uncharacterized protein
STRINGXP_006405405.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63272537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-163MYB_related family protein