PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10027549m
Common NameEUTSA_v10027549mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bHLH
Protein Properties Length: 247aa    MW: 27679.7 Da    PI: 6.6053
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10027549mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.81.1e-094594253
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHH CS
              HLH  2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIks 53
                     +  h  +Er+RR+++ + f+ Lr++lP       ++K   ++ +  Av++Ik+
  Thhalv10027549m 45 KLLHRDIERQRRQEMATLFASLRTHLPLqY---IKGKRAVSDHVNGAVNFIKD 94
                     6679************************66...9999999***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.67E-1240116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.5094395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-745115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-74594IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.19E-64994No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MDHYQNSNPK GYQRQRPFGS SGDGGSSGGG SDMPHEIDDH KKKKKLLHRD IERQRRQEMA  60
TLFASLRTHL PLQYIKGKRA VSDHVNGAVN FIKDTETRIK ELSARRDELS RETDQRYTSN  120
PDPANTRPEL GKSDPASVMV QPCVSGFEVA VSSNSSGPEA LPLSRVLEAL QEQGLEVISS  180
LTTRVNERLM HTIQVENNYT VDLLTNVMDS CSFDINKLLN AYDNHDDDYS GKKEAYCHKE  240
KPEFNA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10027549m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024005701.11e-144transcription factor bHLH126
SwissprotQ9STJ61e-98BH126_ARATH; Transcription factor bHLH126
TrEMBLV4MHG90.0V4MHG9_EUTSA; Uncharacterized protein
STRINGXP_006413309.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29682767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25410.11e-97bHLH family protein