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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Thhalv10027189m |
| Common Name | EUTSA_v10027189mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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| Family |
ERF |
| Protein Properties |
Length: 137aa MW: 15286 Da PI: 8.4715 |
| Description |
ERF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Thhalv10027189m | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 48.6 | 2e-15 | 15 | 58 | 10 | 55 |
AP2 10 kkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
+++g+++AeIrdp++ng +r++lg++ t+e+Aa a+++a+ +l+g
Thhalv10027189m 15 ETWGKFAAEIRDPKKNG--ARVWLGTYETPEDAAVAYDRAAFQLRG 58
57***********9998..*************************98 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 137 aa
Download sequence Send
to blast |
EVKEICKQGR KQTKETWGKF AAEIRDPKKN GARVWLGTYE TPEDAAVAYD RAAFQLRGSK 60
AKLNFPHLIG SCKYEPVRIR PRRRSPEPSV SDYSSPEQKR IGHVGDGFDL DFTMNSESDG 120
GLLTDQSACS FSDSRE*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:11950980}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Strongly induced by wounding. Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1, but seems to not be affected by ethylene. Induction by salicylic acid (SA) is controlled by growth and/or developmental conditions, and seems to be more efficient and independent of PAD4 in older plants. {ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:12068110}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC002388 | 2e-94 | AC002388.3 Arabidopsis thaliana chromosome 2 clone T13E15 map m336, complete sequence. |
| GenBank | AF325089 | 2e-94 | AF325089.1 Arabidopsis thaliana putative ethylene response element binding protein (EREBP) (At2g44840) mRNA, complete cds. |
| GenBank | AF370540 | 2e-94 | AF370540.1 Arabidopsis thaliana putative ethylene response element binding protein; EREBP (At2g44840; T13E15.15) mRNA, complete cds. |
| GenBank | AY072471 | 2e-94 | AY072471.1 Arabidopsis thaliana putative ethylene response element binding protein (EREBP) (At2g44840; T13E15.15) mRNA, complete cds. |
| GenBank | AY088387 | 2e-94 | AY088387.1 Arabidopsis thaliana clone 6397 mRNA, complete sequence. |
| GenBank | CP002685 | 2e-94 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT2G44840.1 | 8e-52 | ethylene-responsive element binding factor 13 |
