PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10027108m
Common NameEUTSA_v10027108mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family LBD
Protein Properties Length: 67aa    MW: 7402.54 Da    PI: 8.8708
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10027108mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26025.63.4e-08562167
           DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAea 67
                     +C+a kvl+  C  +C++ pyfp+++++kf    k      +l+  k+ ++ +re+++++l y+Aea
  Thhalv10027108m  5 PCSAYKVLKSVCIGECAFIPYFPSTESEKFDR--K------ILNN-KTFSPLQREHVVNALSYKAEA 62
                     7***************************9973..3......3332.334666777777777777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508919.589466IPR004883Lateral organ boundaries, LOB
PfamPF031951.3E-5561IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 67 aa     Download sequence    Send to blast
MASNPCSAYK VLKSVCIGEC AFIPYFPSTE SEKFDRKILN NKTFSPLQRE HVVNALSYKA  60
EASKTL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10027108m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006413629.12e-27LOB domain-containing protein 35
TrEMBLV4P6C15e-41V4P6C1_EUTSA; Uncharacterized protein
STRINGXP_006413628.18e-42(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45251455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23660.21e-14LOB domain-containing protein 10