PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10027010m
Common NameEUTSA_v10027010mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family WRKY
Protein Properties Length: 573aa    MW: 62532.4 Da    PI: 6.3153
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10027010mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.71.5e-30183240260
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                      dDgynWrKYGqK vkgse+prsYY+Ct+++C+v+kkvers+ +++++ei+Y   Hnh+k
  Thhalv10027010m 183 DDGYNWRKYGQKLVKGSEYPRSYYKCTHPTCEVTKKVERSR-EGHITEIIYAKAHNHPK 240
                      8****************************************.***************85 PP
2WRKY1001.5e-31375433159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vkg+++prsYY+Ct +gC v+k+ver+++d + v +tY g+H+he
  Thhalv10027010m 375 LDDGYRWRKYGQKVVKGNPNPRSYYKCTANGCIVTKHVERASDDLTSVLTTYIGKHTHE 433
                      59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182901.96E-24180241IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.2E-27180241IPR003657WRKY domain
SMARTSM007741.4E-32182240IPR003657WRKY domain
PROSITE profilePS5081122.343183241IPR003657WRKY domain
PfamPF031061.8E-23183239IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.0E-34360435IPR003657WRKY domain
SuperFamilySSF1182904.97E-28367435IPR003657WRKY domain
PROSITE profilePS5081134.521370435IPR003657WRKY domain
SMARTSM007741.4E-35375434IPR003657WRKY domain
PfamPF031064.4E-24376433IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009555Biological Processpollen development
GO:0009846Biological Processpollen germination
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    Send to blast
MAGFDSKIAV MGEWLDRNPP NHKKRSKAER DHRDVSLEDI KNKDFLQTSF QETPCYSSRG  60
GLSERIAARA GFNVPRLNTE SILQSPCLTI SSPGVSPATL LESPVFLSNP LPSPTTGKLL  120
SQPFGKAKDE FFDDIATSLA FQSISRRSLD PTNIGLEPHD SQDYEQTQLG GLGDSMPSGA  180
PADDGYNWRK YGQKLVKGSE YPRSYYKCTH PTCEVTKKVE RSREGHITEI IYAKAHNHPK  240
PPPNRRSGIG SSGTCLDMQI DGTEQESFGG TNENIEWTSP VSAELDYGSH SGSMQVQNGT  300
QFGYGDAVAD AFFKGEDEED GTSHMSVSLG YDGEVDESES KRRKLEAYAT EMSGSSRATR  360
EPKVVVQTTS DIDILDDGYR WRKYGQKVVK GNPNPRSYYK CTANGCIVTK HVERASDDLT  420
SVLTTYIGKH THEVPAARNS SSHVSPGSSG TLQGSLATQT HNHHVHYPVP HSRPEGLVTA  480
NSSLFDFQPH LRPPSGYSVY IGQTELSDLS MHGLAIGQEK LPGLPGPAIV DSAGLMLQLA  540
AEPKVEPVSQ QELGLSTSSL IYRDIMSRLP HI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-31183436878Probable WRKY transcription factor 4
2lex_A6e-31183436878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10027010m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006413182.10.0probable WRKY transcription factor 34
SwissprotO655900.0WRK34_ARATH; Probable WRKY transcription factor 34
TrEMBLV4LVG80.0V4LVG8_EUTSA; Uncharacterized protein
STRINGXP_006413182.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141811524
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26440.10.0WRKY DNA-binding protein 34
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Hu X, et al.
    Proteasome-mediated degradation of FRIGIDA modulates flowering time in Arabidopsis during vernalization.
    Plant Cell, 2014. 26(12): p. 4763-81
    [PMID:25538183]
  3. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]