PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10026921m
Common NameEUTSA_v10026921mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB
Protein Properties Length: 359aa    MW: 39986.7 Da    PI: 5.9997
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10026921mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.51.1e-161562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W +eEd++l  ++++ G+g+W++ ++  g++R++k+c++rw +yl
  Thhalv10026921m 15 KGPWMPEEDDKLTAYINKNGNGNWRSLPKLAGLNRCGKSCRLRWMNYL 62
                     79********************************************97 PP
2Myb_DNA-binding55.51.3e-1768113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg ++ eE+  +v+++++lG++ W++Ia++++ gRt++++k++w++++
  Thhalv10026921m  68 RGQFSDEEESTIVRLHALLGNK-WSKIASHLP-GRTDNEIKNYWNTHM 113
                      899*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.881062IPR017930Myb domain
SuperFamilySSF466892.98E-2912109IPR009057Homeodomain-like
SMARTSM007172.7E-121464IPR001005SANT/Myb domain
PfamPF002493.5E-151562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.8E-231669IPR009057Homeodomain-like
CDDcd001671.27E-91762No hitNo description
PROSITE profilePS5129427.04763117IPR017930Myb domain
SMARTSM007177.6E-1667115IPR001005SANT/Myb domain
PfamPF002495.6E-1668112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-2770117IPR009057Homeodomain-like
CDDcd001671.15E-1271113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MGRSPCCDQD KGVKKGPWMP EEDDKLTAYI NKNGNGNWRS LPKLAGLNRC GKSCRLRWMN  60
YLRPDIRRGQ FSDEEESTIV RLHALLGNKW SKIASHLPGR TDNEIKNYWN THMRKKLLQM  120
GIDPTTHEPR TNDLNPILDV TQMLEAAISN GQFGNSNLFN NNTALEDLLK LQLIHKMLQI  180
ITPKAIPNIS NSNTNPLNPK PEPVASSFNT NLVNLKPEPV VSSFNTNLVN PKPDPVAGQL  240
NAIDPHVFIN QSTNEDFMPS FEDNWDGFKD NQLPGLVTVS QEDMKSSKHG YHSDQIPTSG  300
SVSVTPETSD LNHPGTTQHS SGSDVLGDWE KFLDDETSDS CWKSFLDLTS PTSSPGPW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C3e-26151174105C-Myb DNA-Binding Domain
1msf_C3e-26151174105C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00438DAPTransfer from AT4G17785Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10026921m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1759890.0AF175989.1 Arabidopsis thaliana putative transcription factor (MYB39) mRNA, complete cds.
GenBankAK1187280.0AK118728.1 Arabidopsis thaliana At4g17780 mRNA for putative MYB transcription factor, complete cds, clone: RAFL21-07-A19.
GenBankAY5502970.0AY550297.1 Arabidopsis thaliana MYB transcription factor (At4g17785) mRNA, complete cds.
GenBankBT0056420.0BT005642.1 Arabidopsis thaliana clone U51012 putative MYB transcription factor (At4g17785) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006414187.20.0F-box/LRR-repeat protein At2g43260
SwissprotQ8GWP00.0MYB39_ARATH; Transcription factor MYB39
TrEMBLV4LYA40.0V4LYA4_EUTSA; Uncharacterized protein
STRINGXP_006414187.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122431730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17785.10.0myb domain protein 39