PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

ERF

Protein Properties

Length: 199aa MW: 21719.8 Da PI: 6.9179

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10026288m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	58.8	1.3e-18	31	80	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ykG+r +k +g+WvAeIr+p +kr r++lg++ t+e Aa+a++ a +l+g Thhalv10026288m 31 PYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPEAAARAYDTAVFYLRG 80 69***99.******9...336***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00380	9.1E-39	31	94	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.813	31	88	IPR001471	AP2/ERF domain
PRINTS	PR00367	5.5E-9	32	43	IPR001471	AP2/ERF domain
CDD	cd00018	1.58E-26	32	90	No hit	No description
Gene3D	G3DSA:3.30.730.10	1.5E-30	32	89	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.31E-21	32	89	IPR016177	DNA-binding domain
Pfam	PF00847	4.2E-12	32	80	IPR001471	AP2/ERF domain
PRINTS	PR00367	5.5E-9	54	70	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
METATDVAAV APTPTVTVAA AAATTRKREK PYKGIRMRKW GKWVAEIREP NKRSRIWLGS 60 YSTPEAAARA YDTAVFYLRG PSARLNFPEL LAGVTVAGGG GGNGGGDMSA AYIRRRAAEV 120 GAQVDALEAA GGNRRHHHHH HHQQRGNHDH VDDDHSDYRL NDDHVECSSN EEGFKRCNGS 180 WEPVDLNKLP DPETSEDD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	2e-15	30	88	4	63	ATERF1
3gcc_A	2e-15	30	88	4	63	ATERF1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00020	PBM	Transfer from AT4G36900	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10026288m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF003103	1e-154	AF003103.1 Arabidopsis thaliana AP2 domain containing protein RAP2.10 mRNA, partial cds.
GenBank	AJ002598	1e-154	AJ002598.1 Arabidopsis thaliana mRNA for TINY-like protein.
GenBank	AL161590	1e-154	AL161590.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 86.
GenBank	BT020317	1e-154	BT020317.1 Arabidopsis thaliana At4g36900 gene, complete cds.
GenBank	BT025757	1e-154	BT025757.1 Arabidopsis thaliana At4g36900 mRNA, complete cds.
GenBank	CP002687	1e-154	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBank	Z99707	1e-154	Z99707.1 Arabidopsis thaliana DNA chromosome 4, ESSA I AP2 contig fragment No. 1.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006411914.1	1e-146	ethylene-responsive transcription factor RAP2-10
Swissprot	Q9SW63	1e-94	RA210_ARATH; Ethylene-responsive transcription factor RAP2-10
TrEMBL	V4MDR5	1e-144	V4MDR5_EUTSA; Uncharacterized protein
STRING	XP_006411914.1	1e-145	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10	28	1650

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36900.1	2e-83	related to AP2 10

Link Out ? help Back to Top
Phytozome	Thhalv10026288m
Entrez Gene	18030616

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Coego A, et al. The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression. Plant J., 2014. 77(6): p. 944-53 [PMID:24456507]